Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32038
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         29   2.9  
05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    27   8.9  
01_06_1749 - 39636951-39638102                                         27   8.9  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 396 HXSNRNALLLHGRNRQGGGTYPRGLTRGPTTNR 298
           H ++    LL GR R GGG + RGL   P  +R
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSR 314


>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 404 RCNYTEILELIFSRWVAHLRCRCL 475
           RC  T +L     RW  HL+C CL
Sbjct: 301 RCTGTTVLRNKAPRWHEHLQCWCL 324


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 418 SIVTTAAPPFKPKRITA 368
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,948,182
Number of Sequences: 37544
Number of extensions: 275077
Number of successful extensions: 523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)