Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32036
         (310 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.033
UniRef50_Q5WMQ0 Cluster: Putative uncharacterized protein OSJNBa...    32   2.9  
UniRef50_Q871Y1 Cluster: Putative uncharacterized protein B9K17....    31   6.6  
UniRef50_Q6CPZ5 Cluster: Kluyveromyces lactis strain NRRL Y-1140...    30   8.8  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 38.3 bits (85), Expect = 0.033
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +1

Query: 163 AGWWYLPVRTHKRPYHQ 213
           A WWYLP RTHKR YH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q5WMQ0 Cluster: Putative uncharacterized protein
           OSJNBa0053E01.2; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0053E01.2 - Oryza sativa subsp. japonica (Rice)
          Length = 536

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 68  QKSKKDLQRYNSYNGWPHPSNKNALLLYGRNXQGGGTYP 184
           +K +K+L + N+    P+PSNK   +  GR   GGG  P
Sbjct: 279 RKERKNLCQPNNQTPAPYPSNKQPRIRGGRRAVGGGRKP 317


>UniRef50_Q871Y1 Cluster: Putative uncharacterized protein
           B9K17.090; n=2; Sordariales|Rep: Putative
           uncharacterized protein B9K17.090 - Neurospora crassa
          Length = 538

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 80  KDLQRYNSYNGWPHPSNKNALLLYGRNXQGGG 175
           ++LQ  N+  GWPHP  ++A    G    GGG
Sbjct: 260 RELQSRNAGQGWPHPKTRHA----GHGGSGGG 287


>UniRef50_Q6CPZ5 Cluster: Kluyveromyces lactis strain NRRL Y-1140
           chromosome E of strain NRRL Y- 1140 of Kluyveromyces
           lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
           lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-
           1140 of Kluyveromyces lactis - Kluyveromyces lactis
           (Yeast) (Candida sphaerica)
          Length = 774

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 56  TFVLQKSKKDLQRYNSYNG 112
           +FV Q SK DL  YNS+NG
Sbjct: 649 SFVSQSSKNDLSNYNSFNG 667


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,639,218
Number of Sequences: 1657284
Number of extensions: 4650543
Number of successful extensions: 8731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8731
length of database: 575,637,011
effective HSP length: 79
effective length of database: 444,711,575
effective search space used: 10228366225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)