Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32036
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   1.5  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    25   1.9  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   2.6  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    24   4.5  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    24   5.9  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    23   7.9  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    23   7.9  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    23   7.9  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 50  NRTFVLQKSKKDLQRYNSYNGWPHPSNKNALLLY 151
           NR +  QK       +NS+  +P PSN  AL  Y
Sbjct: 35  NRNWTAQKILDYSAEWNSHEYFPSPSNWRALPFY 68


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 60  LYYRNLKRTYNVTIVTTAGPTLQTKTHYC 146
           +YY   +  YN+ ++   GP+L+    YC
Sbjct: 74  VYYYGQEGMYNLLVMDLLGPSLEDLFDYC 102


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 231 KYSXQLLVVGPLVSPHG 181
           K++ QL+VVGPL+  +G
Sbjct: 575 KFNIQLIVVGPLIDLYG 591


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 288 MNTLFNXLDYLSCNXWD 238
           +N LFN +D++  + WD
Sbjct: 122 VNALFNTIDWIESSAWD 138


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 79  KGPTTLQ*LQRLAPPFKQKR 138
           KGPT L  L +L PP K  R
Sbjct: 383 KGPTLLSALDQLVPPEKPYR 402


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 72  NLKRTYNVTIVTTAGPTLQTKTHYCFTXEI 161
           NL++   + I+    P L + TH+ +  EI
Sbjct: 665 NLRKNAQLAILKLFAPQLSSSTHFDYKLEI 694


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = +3

Query: 57  HLYYRNLKRTYNVTIVTTAGPTLQTKTHYC 146
           ++YY   +  +N+ ++   GP+L+    +C
Sbjct: 70  NVYYFGQEGLHNILVIDLLGPSLEDLFEWC 99


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 303 TQITQMNTLFNXLDYLSCNXWDI*KYSXQLLVVGPL 196
           +QI   NT FN L+Y      D    + +L+  GPL
Sbjct: 378 SQIKVYNTKFNGLNYSMVEQEDKVPTTYKLVCAGPL 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,100,273
Number of Sequences: 5004
Number of extensions: 17771
Number of successful extensions: 42
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)