Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32036
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0503 - 25701050-25701343,25701431-25701528,25701629-257016...    28   1.7  
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643...    28   1.7  
02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875...    28   1.7  
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546...    27   2.3  
11_08_0048 - 28022335-28022520,28022607-28022699,28022804-280228...    26   5.2  
01_06_1646 - 38887178-38887271,38888230-38888270,38888744-388888...    25   9.2  

>04_04_0503 -
           25701050-25701343,25701431-25701528,25701629-25701689,
           25701772-25701842,25701922-25702048,25702160-25702244,
           25702346-25702409,25702732-25702793,25703214-25703284,
           25703700-25703795,25703960-25704108,25704196-25704265,
           25704483-25704523,25704668-25704743
          Length = 454

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 57  HLYYRNLKRTYNVTIVTTAGPTLQTKTHYC 146
           HL +  ++  YNV ++   GP+L+   +YC
Sbjct: 67  HLKWFGVEGEYNVMVIDLLGPSLEDLFNYC 96


>02_05_1170 +
           34663853-34663928,34664038-34664078,34664317-34664386,
           34664499-34664647,34664784-34664879,34665406-34665476,
           34665637-34665698,34665778-34665841,34665950-34666034,
           34666129-34666255,34666381-34666454,34666539-34666599,
           34666683-34666771,34666897-34667206,34667763-34667815,
           34668299-34668370,34668648-34668914,34669015-34669047,
           34669163-34669245,34669522-34669594,34669834-34670170,
           34670302-34670633,34670816-34671135,34671261-34671612,
           34671691-34671906
          Length = 1170

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 57  HLYYRNLKRTYNVTIVTTAGPTLQTKTHYC 146
           HL +  ++  YNV ++   GP+L+   +YC
Sbjct: 67  HLKWFGVEGEYNVMVIDLLGPSLEDLFNYC 96


>02_04_0657 +
           24786717-24786924,24786925-24786965,24787379-24787521,
           24787597-24787774,24788054-24788123,24788197-24788345,
           24788491-24788586,24789213-24789283,24789879-24789940,
           24790175-24790238,24790326-24790410,24790515-24790641,
           24790714-24790775,24790863-24790923,24790987-24791147,
           24791355-24791648
          Length = 623

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 57  HLYYRNLKRTYNVTIVTTAGPTLQTKTHYC 146
           HL +  ++  YNV ++   GP+L+   +YC
Sbjct: 218 HLKWFGVEGEYNVMVIDLLGPSLEDLFNYC 247


>03_06_0340 +
           33252677-33252864,33253086-33254442,33254565-33254667,
           33256081-33256171,33257208-33257300,33258316-33258471,
           33258583-33258655
          Length = 686

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 74  SKKDLQRYNSYNGWPHPSNKNALLLYGRNXQGGGTYP-CGL 193
           S+ +L     ++ WP PSN N   L  R  Q GG  P CG+
Sbjct: 499 SRDELGSPQLWSNWPSPSNAN---LRTREWQHGGNPPSCGV 536


>11_08_0048 -
           28022335-28022520,28022607-28022699,28022804-28022882,
           28022951-28023061,28023133-28023390,28023468-28023970,
           28024094-28024729,28024778-28025116
          Length = 734

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 2   AFPGRF*DCINAFLIGNRTFVLQKSKKDLQRYNSYNGWPHPSNKNALLLYGRNXQGG 172
           AF GR  D INA    ++   L++S  D   Y +    PH        +YG   + G
Sbjct: 372 AFRGRDKDIINAEFDNSKLKGLKQSMDDYLNYINSPDVPHEFENGKTFIYGWQLREG 428


>01_06_1646 -
           38887178-38887271,38888230-38888270,38888744-38888827,
           38888933-38889080,38889232-38889299,38889563-38889634,
           38890479-38890673
          Length = 233

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 152 RKAVMRFCLKGGASRCNYCNVV 87
           RK + R+C K G   C  CN V
Sbjct: 69  RKCIQRWCDKKGNITCEICNQV 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,466,029
Number of Sequences: 37544
Number of extensions: 129301
Number of successful extensions: 234
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)