Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32036
         (310 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.3  
SB_3312| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.8  
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)                  27   4.1  
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)                26   5.4  
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   25   9.5  
SB_18176| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_57461| Best HMM Match : Pkinase (HMM E-Value=1.1e-34)               25   9.5  

>SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/49 (24%), Positives = 19/49 (38%)
 Frame = +2

Query: 74  SKKDLQRYNSYNGWPHPSNKNALLLYGRNXQGGGTYPCGLTRGPTTSNC 220
           + K+      Y GW H +      +  +   GGG+  C L R  +   C
Sbjct: 77  TSKNAPTLTYYFGWKHWNESRKEYIQKKTNNGGGSRECKLPRNASKEEC 125


>SB_3312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/49 (22%), Positives = 20/49 (40%)
 Frame = +2

Query: 74  SKKDLQRYNSYNGWPHPSNKNALLLYGRNXQGGGTYPCGLTRGPTTSNC 220
           ++K+      Y GW H +      +  +   GGG+  C + R  +   C
Sbjct: 64  TRKNAPTLTYYFGWEHWNESRKEYIQKKTNNGGGSRECKIPRDASKEEC 112


>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
          Length = 630

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 86  LQRYNSY-NGWPHPSNKNALLLYGRNXQGGGTYPCGL-TRGPTTSNCXE 226
           +Q Y  +  G+P   +  A + Y +    GGT+P  +  +GP+   C +
Sbjct: 425 IQPYQGHPQGYPPQGDGKAGVTYPQQVPSGGTHPLAMPQQGPSLRGCMQ 473


>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
          Length = 651

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = +2

Query: 89  QRYNSYNGWPHPSNKNALLLY-----GRNXQGGGTYP 184
           QRYN++    HPS  N  LL+     G+    GG +P
Sbjct: 306 QRYNTFGKTSHPSGYNTGLLHCGIEDGKEYCDGGKHP 342


>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 32  NAFLIGNRTFVLQKSKKDLQRYNSYNGWPHPS 127
           N     N+TF L K K  L+  N  N W HPS
Sbjct: 119 NNMWYSNQTF-LDKVKMRLKNKNLSNNWLHPS 149


>SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 167 GGGTYPCGLTRGPTTSNCXE 226
           GGG+YP  L R P+ ++C +
Sbjct: 543 GGGSYPTPLNRVPSLADCYD 562


>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 188 RTGRYHHPAYFXRKAVMRFCLKGGASRCNYC 96
           RT  + HP Y+   + + +    G  RCN C
Sbjct: 72  RTPAHTHPLYYVNSSEVFYQSTSGVWRCNAC 102


>SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 118 PPFKQKRITALRXKXAGW 171
           PP+KQK + AL     GW
Sbjct: 159 PPYKQKSLNALNSNDHGW 176


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 107  NGWPHPSNKNALL 145
            NGW HP NK+ +L
Sbjct: 1102 NGWEHPVNKSTIL 1114


>SB_18176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 3   LSPDVSRIASMHF**XTGHLYYRNLKRTYNVTIVTTAGP 119
           L+P +  I++ +F    G  Y R+ KR  N+T  TT  P
Sbjct: 152 LNPILYTISTTNFRKNVGAHYRRSSKRLQNLTYFTTDNP 190


>SB_57461| Best HMM Match : Pkinase (HMM E-Value=1.1e-34)
          Length = 355

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  YRNLKRTYNVTIVTTAGPTLQTKTHYC 146
           Y   +R YNV ++   GP+L+   ++C
Sbjct: 80  YYGQERDYNVLVMELLGPSLEDLFNFC 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,643,303
Number of Sequences: 59808
Number of extensions: 145249
Number of successful extensions: 353
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)