Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32036
         (310 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    28   1.2  
Z35637-6|CAA84685.1|  341|Caenorhabditis elegans Hypothetical pr...    27   2.7  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    27   2.7  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    27   2.7  
Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical pr...    27   3.5  
U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork head/HNF-3...    27   3.5  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    25   8.1  

>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +2

Query: 29  INAFLIGNRTFVLQKSKKDLQRYNSYNGWPHPSNKNALLLYGRNXQGGGTYPCGLTRGP 205
           +N+ LI + T  L  S   +   N+ N   +  N N L +YG N   GG    G   GP
Sbjct: 125 LNSSLINSNTNNLSSSSHSMSGSNNNNSNNNVVN-NYLTVYGNNGSSGGGSGSGGGSGP 182


>Z35637-6|CAA84685.1|  341|Caenorhabditis elegans Hypothetical
           protein C03C10.1 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 57  HLYYRNLKRTYNVTIVTTAGPTLQTKTHYC 146
           H+ +   +R YNV ++   GP+L+   ++C
Sbjct: 74  HIRWYGTEREYNVLVMDLLGPSLEDLFNFC 103


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 134 NALLLYGRNXQGGGTYPCG 190
           +A L++GRN + GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 134 NALLLYGRNXQGGGTYPCG 190
           +A L++GRN + GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical
           protein F38A6.1c protein.
          Length = 411

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 68  QKSKKDLQRYNSYNGWPHPSNKNALLLYGRNX-QGGGTYPCGLTRGPT 208
           Q +   L  YN+Y+ +   +   +  +   N  QGGG  P G T G T
Sbjct: 23  QTAANGLLNYNNYSQYATANQLGSNYISPANFMQGGGISPLGFTTGTT 70


>Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical
           protein F38A6.1b protein.
          Length = 442

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 68  QKSKKDLQRYNSYNGWPHPSNKNALLLYGRNX-QGGGTYPCGLTRGPT 208
           Q +   L  YN+Y+ +   +   +  +   N  QGGG  P G T G T
Sbjct: 54  QTAANGLLNYNNYSQYATANQLGSNYISPANFMQGGGISPLGFTTGTT 101


>Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical
           protein F38A6.1a protein.
          Length = 506

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 68  QKSKKDLQRYNSYNGWPHPSNKNALLLYGRNX-QGGGTYPCGLTRGPT 208
           Q +   L  YN+Y+ +   +   +  +   N  QGGG  P G T G T
Sbjct: 118 QTAANGLLNYNNYSQYATANQLGSNYISPANFMQGGGISPLGFTTGTT 165


>U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork
           head/HNF-3-like protein protein.
          Length = 506

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 68  QKSKKDLQRYNSYNGWPHPSNKNALLLYGRNX-QGGGTYPCGLTRGPT 208
           Q +   L  YN+Y+ +   +   +  +   N  QGGG  P G T G T
Sbjct: 118 QTAANGLLNYNNYSQYATANQLGSNYISPANFMQGGGISPLGFTTGTT 165


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical
           protein ZC53.4 protein.
          Length = 1410

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 29  INAFLIGNRTFVLQKSKKDLQRYNSY 106
           IN+F   N+ FVL   +K + +Y+ Y
Sbjct: 786 INSFFEKNKNFVLNDIRKRVTKYSDY 811


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,318,358
Number of Sequences: 27780
Number of extensions: 112095
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)