Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32036
         (310 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23540.1 68414.m02960 protein kinase family protein contains ...    27   1.9  
At3g32330.1 68416.m04125 DNA repair protein-related weak similar...    27   3.4  
At3g31900.1 68416.m04029 hypothetical protein                          27   3.4  
At5g16520.1 68418.m01932 expressed protein                             26   4.5  
At4g31140.1 68417.m04420 glycosyl hydrolase family 17 protein si...    26   4.5  
At3g32280.1 68416.m04116 hypothetical protein                          26   4.5  
At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138...    26   5.9  
At5g43320.1 68418.m05294 casein kinase, putative similar to case...    25   7.8  
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ...    25   7.8  
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...    25   7.8  
At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual...    25   7.8  

>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 41  LIGNRTFVLQKSKKDLQRYNSYNGWPHP--SNKNALLLYGRNXQGG 172
           LIG    V +K K+++  YN     PHP  S K+   LYG++   G
Sbjct: 260 LIGVVFLVRRKKKRNIDSYNHSQYLPHPNFSVKSDGFLYGQDPGKG 305


>At3g32330.1 68416.m04125 DNA repair protein-related weak similarity
           to SP|P41410 DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}
          Length = 327

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 15  VSRIASMHF**XTGHLYYRNLKRTYNV 95
           VSRI + H    TG LY  N+K  +N+
Sbjct: 153 VSRIKTPHKVLLTGSLYQNNIKEVFNI 179


>At3g31900.1 68416.m04029 hypothetical protein
          Length = 393

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 15  VSRIASMHF**XTGHLYYRNLKRTYNV 95
           VSRI + H    TG LY  N+K  +N+
Sbjct: 334 VSRIKTPHKVLLTGSLYQNNIKEVFNI 360


>At5g16520.1 68418.m01932 expressed protein 
          Length = 608

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 185 CGLTRGPTTSNCXEY 229
           CGLTR PT+SN  E+
Sbjct: 468 CGLTRPPTSSNSSEH 482


>At4g31140.1 68417.m04420 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 484

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 110 GWPHPSNKNALLLYGRNXQGG 172
           GWP   +KNA L+Y R    G
Sbjct: 269 GWPTDGDKNANLMYARRYNQG 289


>At3g32280.1 68416.m04116 hypothetical protein
          Length = 474

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 15  VSRIASMHF**XTGHLYYRNLKRTYNV 95
           VSRI + H    TG LY  N+K  +N+
Sbjct: 440 VSRIKTPHKVLLTGSLYKNNIKEVFNI 466


>At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;  previously annotated as
           'auxin-independent growth promoter protein -related'
           based on similarity to axi 1 protein (GB:X80301)
           (GI:559920) from [Nicotiana tabacum], which, due to
           scienitific fraud was retracted. Retraction in: Schell
           J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.
          Length = 656

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 71  KSKKDLQRY-NSYNGWPHPSNKNALLLYGR 157
           KS + LQ Y N  N +P PS+KN   +Y +
Sbjct: 67  KSLETLQPYANPRNSYPAPSSKNNGFIYAK 96


>At5g43320.1 68418.m05294 casein kinase, putative similar to casein
           kinase I (CKI2) [Arabidopsis thaliana]
           gi|1103322|emb|CAA55397; contains protein kinase domain,
           Pfam:PF00069
          Length = 480

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +3

Query: 57  HLYYRNLKRTYNVTIVTTAGPTLQTKTHYC 146
           HL +  ++  YN  ++   GP+++   +YC
Sbjct: 67  HLKWYGVEGEYNCMVIDLLGPSMEDLFNYC 96


>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1705

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 111 AGPTLQTKTHYCFTXEIXRVVVPTRADSQEAL 206
           AG  +Q+  HY    +I RV+V T A   +AL
Sbjct: 634 AGLYIQSLKHYSELPDIKRVIVNTHAIEPQAL 665


>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1703

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 111 AGPTLQTKTHYCFTXEIXRVVVPTRADSQEAL 206
           AG  +Q+  HY    +I RV+V T A   +AL
Sbjct: 634 AGLYIQSLKHYSELPDIKRVIVNTHAIEPQAL 665


>At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual
           specificity kinase 1 (ADK1) [Arabidopsis thaliana]
           gi|1216484|gb|AAB47968; supported by cDNA gi:18700076
           and gi:1216483.  Note: differences between cDNAs in the
           11th exon, possibly due to errors or alternative
           splicing.
          Length = 471

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 57  HLYYRNLKRTYNVTIVTTAGPTLQTKTHYC 146
           +L +  ++  YNV ++   GP+L+   +YC
Sbjct: 67  NLKWYGVEGDYNVMVIDLLGPSLEDLFNYC 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,831,745
Number of Sequences: 28952
Number of extensions: 99001
Number of successful extensions: 213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)