Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32035
         (359 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.3  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   2.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 266 LXPKQSQVTSSSMDPLFFPLS 204
           L P+ SQV +S   P  +PLS
Sbjct: 177 LSPEMSQVAASWHTPSMYPLS 197


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 266 LXPKQSQVTSSSMDPLFFPLS 204
           L P+ SQV +S   P  +PLS
Sbjct: 69  LSPEMSQVAASWHTPSMYPLS 89


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 243 NVLKYGSIIFSTQSAMNP 190
           N+L +  I+F   SA+NP
Sbjct: 333 NILYFSRIMFHINSAVNP 350


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,346
Number of Sequences: 336
Number of extensions: 679
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7299165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)