Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32033
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    27   8.0  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    27   8.0  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    27   8.0  

>Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical
           protein F09B12.2 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 82  HHFTFTAICLTFYLQX*LIRLLFNVFIMIIKI 177
           HH +F A+C+  + Q   +  + N+FIM + +
Sbjct: 131 HHCSFGAVCVGHFNQRYFVAAVINLFIMTLPL 162


>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
            presynaptic activity protein.
          Length = 1409

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 427  PVPNSPYSEXYYNSLAVVLQRRDWEN 504
            P PN P     Y  L + +Q + W+N
Sbjct: 1064 PTPNEPVRHYIYQELILAVQHQIWQN 1089


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform b protein.
          Length = 1408

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 427  PVPNSPYSEXYYNSLAVVLQRRDWEN 504
            P PN P     Y  L + +Q + W+N
Sbjct: 1064 PTPNEPVRHYIYQELILAVQHQIWQN 1089


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform a protein.
          Length = 1409

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 427  PVPNSPYSEXYYNSLAVVLQRRDWEN 504
            P PN P     Y  L + +Q + W+N
Sbjct: 1064 PTPNEPVRHYIYQELILAVQHQIWQN 1089


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,488,326
Number of Sequences: 27780
Number of extensions: 159798
Number of successful extensions: 279
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)