Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32032
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   0.70 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   2.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   2.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 296  SAPASTGSRSPP 331
            S P STGS+SPP
Sbjct: 1118 SGPGSTGSKSPP 1129


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 267 RSGVHVVARVQHQPARVLARLHVPQDAARRQSR 365
           R+G  V A   HQ     A + VPQ   RR +R
Sbjct: 14  RNGGVVSAEHPHQHQHYGAAVQVPQGGRRRAAR 46


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 275 GTCGRSRSAPASTGSRSPPCTARCSASTVPCSSSYRTPITT 397
           G+  RS S+P ++    PP   RC+      +   RTP TT
Sbjct: 86  GSLXRS-SSPQTSAPTGPPIV-RCALRKHKPNRKPRTPFTT 124


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 223 TMEHREKLCSVLPARAQGYMWSLAFSTSQHGF 318
           T   +E+LC V   RA GY ++        GF
Sbjct: 180 TPRQQEELCLVCGDRASGYHYNALTCEGCKGF 211


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,790
Number of Sequences: 336
Number of extensions: 2571
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)