Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32032
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po... 44 1e-05
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 30 0.18
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 29 0.55
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.55
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 1.7
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 2.2
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 26 3.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 3.8
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 3.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 5.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.1
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 6.7
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 25 6.7
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 25 6.7
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 6.7
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 6.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 8.9
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 8.9
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 25 8.9
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 8.9
>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 44.4 bits (100), Expect = 1e-05
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Frame = +1
Query: 217 IFTMEHREKLCSVLPAR-AQGYMWSLAFSTSQHGFSLASMY----RKMQRVDSP---VLL 372
+ T E + LPAR A W +S G SL +MY ++ R P +L
Sbjct: 14 LITDELASHIVENLPARYASAETWKRIYSLQHDGASLQTMYLACEKEKARSGHPKGACIL 73
Query: 373 VIQDTDNNVFGAMTSCALHXSEHFYGXGESFLYSF 477
++DTD +VFG L + H++G E+FL+ +
Sbjct: 74 AVRDTDGDVFGVFIPDYLIPAPHYFGSEETFLWKY 108
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 30.3 bits (65), Expect = 0.18
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 108 SEKVLSMSDELRRALYSSGASVDMEFLPPDLIG--ATGNIHHGTQGEVVQRATGSRSG 275
S K+ + L+ + GA +D LPPDLI +TG++ H + +++ T G
Sbjct: 55 SNKIQVNLNNLKAVESALGAEIDGAILPPDLIKTISTGDMDHPSWNSALEKLTSFLEG 112
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 28.7 bits (61), Expect = 0.55
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 163 GPPSTWSSCRPTSLAPREIFTMEHREKLCSVLPARAQGYMWS 288
GP + WS+ T I T ++CS LPA Y+W+
Sbjct: 108 GPAAYWSAMLVTGFC--SIVTAACLAEICSALPAAGSIYLWA 147
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 28.7 bits (61), Expect = 0.55
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 218 YSPWNTGRSCAACY----RLALRGTCGRSRSAPASTGSRSPPCTARCSASTVPCSSS 376
YS + T ++C+ C L+ GT + AP+ G+R+ S+S+ P SSS
Sbjct: 102 YSQYFTLQACSTCTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSS 158
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 358 SPVLLVIQDTDNNVFGAMTSCALHXSEHFY 447
SP+LL + + D + A+ C S+ FY
Sbjct: 644 SPILLAVYNPDTGAYEAVCKCMSGFSDQFY 673
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 295 FSTSQHGFSLASMYRKMQRVDSPVLLVIQ 381
F S HG+S+ ++ RKM +P +L+I+
Sbjct: 302 FRASFHGYSMYALERKMCNYHNPSILLIK 330
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 66 RFSPTATERTSTFESEKVLSMSDELRRALYSSGASVDMEFLP 191
RF PT + EK S+SD + + + + A E++P
Sbjct: 137 RFLPTVSGEEGDLTEEKTTSLSDLIMQKINEAEARARGEYIP 178
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 221 SPWNTGRSCAACYRLALRGTCGRSRSAPASTGSRSPPCTARCSASTVPCSSSYRTPITT 397
SP ++ S ++ + + S S+ +S+ S S ++ S+S+ SSS PIT+
Sbjct: 154 SPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITS 212
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 308 STGSRSPPCTARCSASTVPCSSSYRTPITTCLGP*RHV 421
ST + PP T+ + +TVP ++S T TT P HV
Sbjct: 79 STTTTVPPTTSMNTTTTVPPTTSLNTTTTTA-PPTTHV 115
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Frame = +2
Query: 290 SRSAPASTGSRSPP-------CTARCSASTVPCSSSYRTPITTCLGP 409
S S+ ++TGS S P CT S SSS TPIT + P
Sbjct: 94 STSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPP 140
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 290 SRSAPASTGSRSPPCTARCSASTVPCSSS--YRTPITT 397
S S P+S+ SP + S+S++P SSS + + ITT
Sbjct: 522 SSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITT 559
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 6.7
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 169 PSTWSSCRPTSLAPREIFT 225
P +W + PT P+++FT
Sbjct: 260 PESWGTSLPTEAIPKQVFT 278
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 52 GLKWFGSALRRPKGLQLSKARRYC 123
GL W +L P L +S+ RR+C
Sbjct: 28 GLGWKSPSLAEPFTLPISEIRRFC 51
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +1
Query: 163 GPPSTWSSCRPTSLAPREIFTMEHREKLCSVLPARAQGYMWSLAFSTSQHG 315
GP + W + P ++ + ++CS LP Y W+ A ++G
Sbjct: 76 GPSAYWITY--IIAIPLQLISAATMAEVCSALPTAGSLYFWASAAGGKKYG 124
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 296 SAPASTGSRSPPCTARCSASTVPCSSSY-RTPITTCL 403
++P T S +P ++ S ST+P SSS + ITT +
Sbjct: 118 TSPVPTTSSTPTSSSILSNSTIPSSSSISASTITTTI 154
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.0 bits (52), Expect = 6.7
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +1
Query: 166 PPSTWSSCRPT-SLAPREIFTMEHREKLCSVLPARAQGYMWSL-AFSTSQHGFSLASMYR 339
P ST P + A R T+ H K+ +LP WSL + ST+Q + ++
Sbjct: 545 PTSTVDIRSPLGTFAERNFQTIYHPNKIVYMLPLNITQKYWSLDSSSTAQRALTFSAKIS 604
Query: 340 K 342
K
Sbjct: 605 K 605
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 425 YXRLNISTVLANRSSIRFKGLRKTRA 502
+ RL++ST+++N S GLR A
Sbjct: 1314 FDRLSLSTIMSNNSFTSLNGLRTDSA 1339
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 63 VRFSPTATERTSTFESEKVLSMSDELRRALYSSGASVDMEFL-PPDLI 203
+ +P+ E +ST ESE++ E + LYS ++ L P+L+
Sbjct: 163 LNLAPSDKEISSTEESEQLCYKEQESEKELYSKDNDDSLDILNVPNLV 210
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 70 SALRRPKGLQLSKARRYCR 126
+ RRPK LQLS+ +Y R
Sbjct: 29 TTFRRPKTLQLSRKPKYAR 47
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 74 PYGDRKDFNFRKREGIV 124
P DR+DF F KR I+
Sbjct: 354 PIHDRRDFEFAKRNNII 370
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/42 (21%), Positives = 20/42 (47%)
Frame = -2
Query: 401 NTLLSVSCMTRSTGLSTRCILRYMEASENPCWLVLNASDHMY 276
N +++ + S + +CI + + CWL+L + +Y
Sbjct: 757 NNKVNIGTIKASLEVLVKCIAPIIPCFSSECWLLLGHNSSVY 798
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,160
Number of Sequences: 5004
Number of extensions: 44559
Number of successful extensions: 140
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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