Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32032
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39870.1 68417.m05649 expressed protein hypothetical protein,... 57 8e-09
At2g05590.2 68415.m00595 expressed protein similar to nucleolar ... 54 8e-08
At2g05590.1 68415.m00594 expressed protein similar to nucleolar ... 54 8e-08
At5g06260.1 68418.m00700 nucleolar protein-related contains weak... 36 0.012
At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 compone... 31 0.46
At1g17920.1 68414.m02218 homeobox-leucine zipper family protein ... 29 1.9
At2g43340.1 68415.m05389 expressed protein 29 2.5
At2g06820.1 68415.m00761 expressed protein low similarity to zin... 29 2.5
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 4.3
At4g30870.1 68417.m04383 repair endonuclease family protein cont... 27 5.7
At5g53320.1 68418.m06627 leucine-rich repeat transmembrane prote... 27 7.5
At5g21940.1 68418.m02547 expressed protein supported by full len... 27 7.5
At5g16690.1 68418.m01954 origin recognition complex subunit 3-re... 27 7.5
At3g08950.1 68416.m01045 electron transport SCO1/SenC family pro... 27 7.5
At2g04420.1 68415.m00446 expressed protein 27 7.5
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 27 9.9
>At4g39870.1 68417.m05649 expressed protein hypothetical protein,
Schizosaccharomyces cerevisae, Z99168
Length = 394
Score = 56.8 bits (131), Expect = 8e-09
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +1
Query: 193 PTSLAPREIFTMEHREKLCSVLPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLL 372
P P + + + R L + LPA QG W L +ST +HG SL+++YRK LL
Sbjct: 202 PEISEPSLLLSEQSRRSLYTSLPALVQGRKWILLYSTWRHGISLSTLYRKSLLWPGLSLL 261
Query: 373 VIQDTDNNVFGAMTSCALHXSEHFY-GXGESFLYS 474
V+ D +VFG + L ++ Y G +F+++
Sbjct: 262 VVGDRKGSVFGGLVEAPLIPTDKKYQGTNSTFVFT 296
>At2g05590.2 68415.m00595 expressed protein similar to nucleolar
protein C7C (GI:13540302) [Rattus norvegicus]
Length = 303
Score = 53.6 bits (123), Expect = 8e-08
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +1
Query: 238 EKLCSVLPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGAMTS 417
E L + LP +G W L +ST +HG SL ++ R+ + P LLV D VFGA+
Sbjct: 141 EFLHASLPNIVRGCKWILLYSTLKHGISLRTLLRRSGELPGPCLLVAGDKQGAVFGALLE 200
Query: 418 CALHXS--EHFYGXGESFLYS 474
C L + + G ++FL++
Sbjct: 201 CPLQPTPKRKYQGTSQTFLFT 221
>At2g05590.1 68415.m00594 expressed protein similar to nucleolar
protein C7C (GI:13540302) [Rattus norvegicus]
Length = 263
Score = 53.6 bits (123), Expect = 8e-08
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +1
Query: 238 EKLCSVLPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGAMTS 417
E L + LP +G W L +ST +HG SL ++ R+ + P LLV D VFGA+
Sbjct: 141 EFLHASLPNIVRGCKWILLYSTLKHGISLRTLLRRSGELPGPCLLVAGDKQGAVFGALLE 200
Query: 418 CALHXS--EHFYGXGESFLYS 474
C L + + G ++FL++
Sbjct: 201 CPLQPTPKRKYQGTSQTFLFT 221
>At5g06260.1 68418.m00700 nucleolar protein-related contains weak
similarity to nucleolar protein C7C (GI:13540302)
[Rattus norvegicus]
Length = 424
Score = 36.3 bits (80), Expect = 0.012
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 283 WSLAFSTSQHGFSLASMYRKMQRVD-SPVLLVIQDTDNNVFGAMTSCALHXSEHFYGXGE 459
W L + +S HG S + S +L+I+DT+ V+G S FYG +
Sbjct: 238 WKLLYHSSVHGQSFNTFLGHTSNTGMSASVLIIKDTEGYVYGGYASQPWERYSDFYGDMK 297
Query: 460 SFLY 471
SFL+
Sbjct: 298 SFLF 301
>At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 component,
putative / oxoglutarate decarboxylase, putative /
alpha-ketoglutaric dehydrogenase, putative similar to
SP|P20967 2-oxoglutarate dehydrogenase E1 component,
mitochondrial precursor (EC 1.2.4.2)
(Alpha-ketoglutarate dehydrogenase) {Saccharomyces
cerevisiae}; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF00676:
Dehydrogenase E1 component
Length = 1025
Score = 31.1 bits (67), Expect = 0.46
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 260 RLALRGTCGRSRSAPASTGSRSPPCTARCSASTV 361
+LA+R T +SR +T +R PC RC ST+
Sbjct: 12 KLAIRRTLSQSRCGSYATRTRVLPCQTRCFHSTI 45
>At1g17920.1 68414.m02218 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
A20 (GI:1881536) [Arabidopsis thaliana]; similar to
homeobox protein GI:1173622 from [Phalaenopsis sp.
SM9108]
Length = 687
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -2
Query: 347 CILRYMEASENPCWLVLNASDHMYP*ARAGSTLHNF-SLCSMVNISRGANEV 195
C+LRY + E+ W ++N S + +P + S + F S C + ++S G ++V
Sbjct: 344 CVLRYCQQIEHGTWAIVNVS-YEFPQFISQSRSYRFPSGCLIQDMSNGYSKV 394
>At2g43340.1 68415.m05389 expressed protein
Length = 189
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 220 FTMEHREKLCSVLPARAQGYMWSLAF-STSQHGFSLASMYRKMQRVDSPV 366
F E +LC+ LPA Y S F H S +S +K +DSPV
Sbjct: 103 FNYEEIPELCNTLPALELCYSMSQKFIDQDHHHHSSSSPEKKSSVLDSPV 152
>At2g06820.1 68415.m00761 expressed protein low similarity to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 267
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 230 NTGRSCAACYRLAL-RGTCGRSRSAPASTGSRSPPCTARCSASTVPCSSSYRTPITTCLG 406
N C C RL+ + C R +SAP ST + +P A S S +Y TP +
Sbjct: 190 NLKNHCLHCQRLSHEKKNCPRVQSAPVSTKTSNPLPVASLPVSQ-SNSRNYYTPADNFVA 248
Query: 407 P 409
P
Sbjct: 249 P 249
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 27.9 bits (59), Expect = 4.3
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = -3
Query: 274 PEREPVARCTTSPCVPW*IF-PVAPM--RSGGKNSMSTEAPDE*SARRSSSLIDNTFSLS 104
P+ P A T SP P P +P G N+ S P S + S D++ LS
Sbjct: 78 PQPSPSAPITPSPPSPTTPSNPRSPPSPNQGPPNTPSGSTPRTPSNTKPSPPSDSSDGLS 137
Query: 103 KVEVLSVAVGLNRTISIHETVCIYTKNKLQR 11
V+ +A+G + I +C+ K K +R
Sbjct: 138 TGVVVGIAIGGVAILVILTLICLLCKKKRRR 168
>At4g30870.1 68417.m04383 repair endonuclease family protein
contains Pfam PF02732 : ERCC4 domain; similar to repair
endonuclease (TIGR:At5g41150) [Arabidopsis thaliana]
Length = 661
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 314 GSRSPPCTARCSASTVPCSSSY-RTPITTCLGP*RHVLYXRLNISTVLANRSSI 472
GS PC++ S + CSSS R P+ C+ RH + +A R ++
Sbjct: 312 GSTLNPCSSGSSHAVKACSSSVRRLPVGDCIWIARHKYLETEYVLDFIAERKNV 365
>At5g53320.1 68418.m06627 leucine-rich repeat transmembrane protein
kinase, putative
Length = 601
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 387 GVLYDEEHGTVDALHLAVHG 328
GV + +H +VDALHLA G
Sbjct: 57 GVTCNSDHSSVDALHLAATG 76
>At5g21940.1 68418.m02547 expressed protein supported by full length
cDNA GI:22531282 from [Arabidopsis thaliana]
Length = 264
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 163 GPPSTWSSCRPTSLAPREIFTMEHREKLCSVLPARAQGYMWSLAFSTSQHGF 318
G S SS + PR++ +H+ K L R+QG +L S S GF
Sbjct: 186 GDSSPGSSPTTSGSPPRQLHHHQHQMKKLPPLYPRSQGSFGNLTSSQSSLGF 237
>At5g16690.1 68418.m01954 origin recognition complex subunit
3-related / ORC3-related low similarity to SP|Q9UBD5
Origin recognition complex subunit 3 (Origin recognition
complex subunit Latheo) {Homo sapiens}
Length = 556
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 322 LASMYRKMQRVDSPVLLVIQDTDNNVFGAMTSCALHXSE 438
LAS YR+ + ++PV++++ DT+ ++ L SE
Sbjct: 216 LASWYRENKNHENPVVIIVDDTERCCGPVLSDLILILSE 254
>At3g08950.1 68416.m01045 electron transport SCO1/SenC family
protein similar to SP|P23833 SCO1 protein, mitochondrial
precursor {Saccharomyces cerevisiae}; contains Pfam
profile PF02630: SCO1/SenC
Length = 334
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 458 SPXP*KCSDXCRAHDVMAPNTLLSVSCMTRSTGLSTRCIL 339
SP P SD R D P + S++C + RC+L
Sbjct: 32 SPSPACISDALRHGDFSLPRSFFSLNCGIEMLKMDQRCLL 71
>At2g04420.1 68415.m00446 expressed protein
Length = 221
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 291 RVQHQPARVLARLHVPQDAA 350
R +QPA +LA+ H+PQD +
Sbjct: 182 RTNNQPADMLAKSHLPQDTS 201
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 142 RSSSLIDNTFSLSKVEVLSVAVGLNRTISIHETVCIYT-KNKLQRN 8
RS S+ DN + + V G N + +H+ I T K K QRN
Sbjct: 2305 RSISVFDNDIGSGSISPMIVTGGKNGDVGLHDFRFIATGKMKKQRN 2350
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,076,915
Number of Sequences: 28952
Number of extensions: 251326
Number of successful extensions: 751
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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