Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32028
         (516 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    44   3e-06
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   2.0  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   4.6  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   4.6  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 44.0 bits (99), Expect = 3e-06
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 4/137 (2%)
 Frame = +2

Query: 98  FQMFDTTKSGYIDVLKISTILNTMGQLFDDSXLQALIDENDPENSGKINFDGFCNIASHF 277
           F ++D   SG +D + +   L  +  L     L   +         KI F+ F  I S  
Sbjct: 17  FSVYDWEGSGQMDAMDLGNALRALN-LNPTIELIGKMGGTQKRGEKKIKFEEFLPIFSQV 75

Query: 278 LEEEDAEAMQQELKEAFRLYDREGXGYITTSTLKEILAALDDKLSNADLDGIIAEI---- 445
            +E++    +  L E  +LYD+   G +  + L   L AL ++L + +LD ++ +     
Sbjct: 76  KKEKEQGCFEDFL-ECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDCMDPE 134

Query: 446 DTDGS*TVDFDEFMEMM 496
           D DG+  + +  F++ M
Sbjct: 135 DDDGN--IPYAPFLKKM 149


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 70  QKDGHAA*SIPDV*HHEVWLHRRAEDLH 153
           Q+   AA + P    + VW HR   DLH
Sbjct: 884 QRAWDAAAAAPTASRYAVWAHRMIPDLH 911


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 248 DGFCNIASHFLEEEDAEAMQQELKEAFRLYDR 343
           DG   IA H  +EE++  ++++ K    + DR
Sbjct: 627 DGVTYIADHTRKEEESSRVKEDWKYVAMVLDR 658


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 269  SHFLEEEDAEAMQQELKEAFRLYDREGXGYITTSTLKEILAALDDKLSN 415
            SHF+         + +++  R YD  G         +E L+ALD KL +
Sbjct: 891  SHFMSSMGFAGEVELIRQGERDYDEYGIRIYVKYRNEEKLSALDRKLQS 939


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,223
Number of Sequences: 2352
Number of extensions: 8569
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46937349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)