Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32027
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.5  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   6.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   6.5  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   6.5  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 173 KMNSEARSCTGSLAVHPRSRDIKIANFSI 259
           K ++ ++S  G     PR+  +K+  FSI
Sbjct: 44  KRSTSSQSTEGENDARPRASQVKLNVFSI 72


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 450 LHFSASWRLTRRE 488
           LHF ASW  +++E
Sbjct: 414 LHFHASWLKSKKE 426


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 450 LHFSASWRLTRRE 488
           LHF ASW  +++E
Sbjct: 421 LHFHASWLKSKKE 433


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 239 KIANFSITFYGSEL 280
           KIANF +TF+   L
Sbjct: 64  KIANFMLTFFNVSL 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,369
Number of Sequences: 336
Number of extensions: 2077
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)