Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32027
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 91 7e-20
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 88 8e-19
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 81 7e-17
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 50 2e-07
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 48 6e-07
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 37 0.002
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 34 0.011
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 29 0.31
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 29 0.41
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 29 0.55
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 1.3
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 27 2.2
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 26 2.9
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.8
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 5.1
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 6.7
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 8.9
SPBC582.09 |pex11||peroxisomal biogenesis factor 11|Schizosaccha... 25 8.9
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 91.5 bits (217), Expect = 7e-20
Identities = 45/104 (43%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Frame = +2
Query: 191 RSCTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 370
RS +G L P SRDIKI +++++F+G L+++ +ELN G+RYGL+G NG GKS+ L +
Sbjct: 61 RSASGVLTSQPMSRDIKIDSYTLSFHGRLLIENATIELNHGQRYGLLGDNGSGKSTFLES 120
Query: 371 LXRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERV-KLE 499
+ R+V PEHID + L E SD A+ +++ +++V KLE
Sbjct: 121 VAARDVEYPEHIDSYLLNAEAEPSDVNAVDYIIQSAKDKVQKLE 164
Score = 28.3 bits (60), Expect = 0.72
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 278 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALXRREVPIPEHI 406
L +D ++ R +VG NG GKS+LL + +PI ++
Sbjct: 405 LYRDLSFGIDMDSRVAIVGKNGTGKSTLLNLITGLLIPIEGNV 447
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 87.8 bits (208), Expect = 8e-19
Identities = 43/85 (50%), Positives = 53/85 (62%)
Frame = +2
Query: 224 RSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALXRREVPIPEH 403
+S+DIKI + F G +L L L GRRYGL G NG GKS+LL AL RRE+ IP H
Sbjct: 179 KSKDIKIDGIDLAFAGHRILTGASLTLAQGRRYGLTGRNGIGKSTLLRALSRREIAIPTH 238
Query: 404 IDIFHLTREMPASDKTALQCVMEVD 478
I I H+ +EM D ALQ V++ D
Sbjct: 239 ITILHVEQEMTGDDTPALQSVLDAD 263
Score = 29.5 bits (63), Expect = 0.31
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 269 GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALXRREVP 391
G +L+ +++ R G+VG NG GKS++L L + P
Sbjct: 530 GHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHP 570
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 81.4 bits (192), Expect = 7e-17
Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Frame = +2
Query: 200 TGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALXR 379
TG+L P SRD+++ S++ +G L++D+ L L GRRYGL+ NG GKS+LL A+
Sbjct: 264 TGNLLSPPNSRDLQVEKLSVSAWGKLLIKDSELNLINGRRYGLIAPNGSGKSTLLHAIAC 323
Query: 380 REVPIPEHIDIFHLTREMPASDKTALQCVMEVDE-ERVKLEKLAE 511
+P P +D + L RE ++ T ++ V++++E ER LE + E
Sbjct: 324 GLIPTPSSLDFYLLDREYIPNELTCVEAVLDINEQERKHLEAMME 368
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 IKIANFSITFYGSELLQDTL-LELNCGRRYGLVGLNGCGKSSLLAALXRREVP 391
IK + S + G + L L+ R LVG NG GK++L+ + + P
Sbjct: 594 IKFQDVSFNYPGGPTIFSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQP 646
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 50.0 bits (114), Expect = 2e-07
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +2
Query: 248 NFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALXRREV---PIPEHIDIFH 418
+FS+ + G LL T L L G RYG+VG NGCGKS+LL A+ +V P P+ +
Sbjct: 449 DFSLAYGGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAIGDYKVENFPSPDEVKTCF 508
Query: 419 LTREMPASD 445
+ + D
Sbjct: 509 VAHSLQGED 517
Score = 30.3 bits (65), Expect = 0.18
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 236 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSLLAALXRREVP 391
+K+ N S T+ ++ L + + L+ R ++G NG GKS+L+ L +P
Sbjct: 692 LKMTNASYTYPNAKKKSLDNVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIP 745
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 48.4 bits (110), Expect = 6e-07
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 233 DIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALXRREVP-IPEHID 409
D+ FS+ + LL T L L GRRYGL G NG GKS+L+ A+ +V P H+
Sbjct: 434 DLCNCEFSLAYGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHLR 493
Query: 410 IFHLTREMPASD 445
++ ++ S+
Sbjct: 494 TVYVEHDIDESE 505
Score = 30.7 bits (66), Expect = 0.14
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 236 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSLLAALXRREVP 391
IK+ + S + G+ L D +++ R ++G NG GKS+L+ L +P
Sbjct: 673 IKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTGELLP 726
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 36.7 bits (81), Expect = 0.002
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 233 DIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALXRREVPIPEHI 406
++ ++N S TF + L L+L G R LVG NG GKS+LL L + + HI
Sbjct: 2 EVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGHI 61
Query: 407 DI 412
+
Sbjct: 62 SV 63
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 34.3 bits (75), Expect = 0.011
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 236 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 367
I + + + ++G ++L D + G R+ L G NG GK++LLA
Sbjct: 265 ISMEHLNCVYWGRKVLSDINWTIREGERWALTGSNGSGKTTLLA 308
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 29.5 bits (63), Expect = 0.31
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 281 LQDTLLELNCGRRYGLVGLNGCGKSSLLAALXRREVPIPEHIDI 412
L + +E++ + G+VG G GKS+L AL R P I+I
Sbjct: 1243 LNNINIEISPREKIGIVGRTGAGKSTLAMALFRIIEPTEGKIEI 1286
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 29.1 bits (62), Expect = 0.41
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 221 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALXRREVPI 394
P IK ++S+ + + +L D + + + G+VG G GKS+L AL R P
Sbjct: 1219 PSHGAIKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLIEPT 1278
Query: 395 PEHIDI 412
I +
Sbjct: 1279 SGDIQL 1284
Score = 26.2 bits (55), Expect = 2.9
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +2
Query: 233 DIKIANFSITFYGSELLQDTLLELNCGRRYG----LVGLNGCGKSSLLAA 370
+IK FS + G + TL +++ R G +VG G GKSSLL A
Sbjct: 579 EIKKGTFSWSGPGQNAAEPTLRDIDFVARRGELCCIVGKVGMGKSSLLEA 628
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 28.7 bits (61), Expect = 0.55
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 278 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALXR 379
+L + G + VG +GCGKS++L L R
Sbjct: 458 ILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFR 491
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 281 LQDTLLELNCGRRYGLVGLNGCGKSSLLAALXRREVPIPE-HIDIFHLT 424
L + L + + +VG++G GKS+L+ L R+ P + +ID + LT
Sbjct: 1118 LNNVSLSIEAREKVAIVGISGSGKSTLV-ELLRKTYPSEDIYIDGYPLT 1165
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 311 GRRYGLVGLNGCGKSSLLAALXRREVP 391
G+ GLVG NG GKS+ L L + P
Sbjct: 103 GQVLGLVGTNGIGKSTALKILSGKMKP 129
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 296 LELNCGRRYGLVGLNGCGKSSLLAALXRREVPIPEH 403
LEL GLVGL GKS+LL L + + E+
Sbjct: 231 LELKTICEIGLVGLPNAGKSTLLNCLTASKSKVGEY 266
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -3
Query: 349 STPIKSD*PISSPTIQLQESILK*LTPIESN*KVS 245
S+P++ P+ PT+QLQ S L L P E KV+
Sbjct: 437 SSPVR---PMLKPTLQLQNSPLSKLVPQEVGNKVN 468
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 221 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALXR 379
P + I N ++++ + +L+D LE+ + +VG G GKS++ L R
Sbjct: 1175 PTLGHVSIKNLTVSYSIGQAAVLEDINLEILPKEKIAIVGRTGSGKSTMGLTLLR 1229
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 275 ELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALXR 379
++L+ L + G+ VG +GCGKS+ + + R
Sbjct: 1135 KVLRGLNLTVKPGQFVAFVGSSGCGKSTTIGLIER 1169
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = +2
Query: 323 GLVGLNGCGKSSLLAALXRREV----PIP 397
GL+G GKSS++ L +++V PIP
Sbjct: 314 GLIGFPNAGKSSIINTLRKKKVCNVAPIP 342
>SPBC582.09 |pex11||peroxisomal biogenesis factor
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 238
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 395 PEHIDIFHLTREMPASDKT--ALQCVMEV 475
P+++ + + MPA DKT ALQ V ++
Sbjct: 8 PQYVHVLRMLNSMPARDKTFRALQFVAKL 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,043
Number of Sequences: 5004
Number of extensions: 36368
Number of successful extensions: 241
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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