Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32026
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   5.1  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   5.1  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   5.1  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    25   6.7  

>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 121 QKKILSXFQDVSQLNTXDEYYKIGKDY-DIEMNMDNYTNKKAVEEFLKMYRTGFMP 285
           + K+     D + L   D      KD+ ++ +N  +Y NK  ++ F  + +  F P
Sbjct: 617 EMKLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSSYQNKDELKPFQLLVKHAFKP 672


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +1

Query: 127 KILSXFQDVSQLNTXDEYYKIGKDYDIEMNMDNYTNKKAVE 249
           K L   +  S       YYK+ K Y  + N D     K VE
Sbjct: 89  KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 415 NQGQFL-YAFYIAVIQRSDCHG 477
           N G FL YAF+  VI+  D HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 73  PSTIKTKNVDAVFVEKQKKILSXFQDVSQLNT 168
           PST + KN   VF+E+  K+   + D   + T
Sbjct: 263 PSTCEAKNAKVVFLERVPKLDCSYSDHFAIET 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,283
Number of Sequences: 5004
Number of extensions: 37394
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)