Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32026
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 33 0.12
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 33 0.12
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 29 2.0
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 29 2.0
AF125455-2|AAP13747.2| 431|Caenorhabditis elegans Hypothetical ... 28 4.6
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 27 6.0
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 27 6.0
AF078790-15|AAC26929.2| 352|Caenorhabditis elegans Hypothetical... 27 8.0
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 33.1 bits (72), Expect = 0.12
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = +1
Query: 118 KQKKILSXFQDVSQLNTXDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLE 297
K KK+ S F + +T D YY + + + + + +TN V+E +K Y P + +
Sbjct: 51 KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99
Query: 298 FSVFYDKMRDEAIALFHLFYYAKD 369
+S +EAIA FH +Y K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 33.1 bits (72), Expect = 0.12
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = +1
Query: 118 KQKKILSXFQDVSQLNTXDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLE 297
K KK+ S F + +T D YY + + + + + +TN V+E +K Y P + +
Sbjct: 51 KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99
Query: 298 FSVFYDKMRDEAIALFHLFYYAKD 369
+S +EAIA FH +Y K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 85 KTKNVDAVFVEKQKKILSXFQDVSQLNTXDEY 180
++K+VDA KQK ++ Q V LN +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 85 KTKNVDAVFVEKQKKILSXFQDVSQLNTXDEY 180
++K+VDA KQK ++ Q V LN +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 85 KTKNVDAVFVEKQKKILSXFQDVSQLNTXDEY 180
++K+VDA KQK ++ Q V LN +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>AF125455-2|AAP13747.2| 431|Caenorhabditis elegans Hypothetical
protein Y48A5A.1 protein.
Length = 431
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 9 WKSVLDSGWACSRRAQQCSTKAEHHKDKKC 98
W+S +SGW C++ + S A+ K+C
Sbjct: 276 WESACESGWNCAKLSPSLSFFAKFSSVKEC 305
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 286 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYXTACFARVHLNQ 420
KN+ D+M DEAI LF FE +Y R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 286 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYXTACFARVHLNQ 420
KN+ D+M DEAI LF FE +Y R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536
>AF078790-15|AAC26929.2| 352|Caenorhabditis elegans Hypothetical
protein F36H12.2 protein.
Length = 352
Score = 27.1 bits (57), Expect = 8.0
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +1
Query: 202 DIEMNMDNYTNKKAVEE---FLKMYRTGFMPKNLEFSVFYDKMRDEAIALFHLFYYAKDF 372
D+E MD+ +K+AV++ F ++Y + MPK E+ + ++ LF +Y ++
Sbjct: 55 DVEFEMDHLEDKEAVQKTKTFDELYESQ-MPKYFEYQSNFSEVNGIWTLLFDQNHY-ENM 112
Query: 373 ETFYXTACFARVHLNQGQFL 432
TF A LN ++
Sbjct: 113 STFELQAAICAA-LNSKHYM 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,311,155
Number of Sequences: 27780
Number of extensions: 213716
Number of successful extensions: 571
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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