Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32025
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    26   3.8  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   5.1  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    25   6.7  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    25   6.7  

>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 104 LYWKGVYFPVSAASATVRDRQIAKKTRISRCYEA 3
           LYW G +F + A    +    I +  ++SR Y+A
Sbjct: 126 LYWLGEFFGIQAKLFPLFQGSINENEKLSRYYQA 159


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 117 RVNSVVLERSVLSSFGGQRHCQRQADCQKDTHFPL 13
           +VN  +L+R VL  FG Q   + +   +    FPL
Sbjct: 190 QVNGFLLDRFVLGGFGDQCDPEYRGSIENRCRFPL 224


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 142 PGRYVADPXRYDPSRDN 192
           PG YV+D   Y P +DN
Sbjct: 236 PGSYVSDRASYTPQQDN 252


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 319 KEDLSKYLGDAYKGSSIVPLPVVKPTISRASHTHI 423
           K+D SK + DAYK +S+  + V + T +   +  +
Sbjct: 375 KKDSSKRISDAYKKASVYFIFVAQQTYNALGYAQV 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,536
Number of Sequences: 5004
Number of extensions: 26479
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)