Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32025
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 29   2.3  
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)                     27   6.9  
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                27   9.2  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           27   9.2  
SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)                    27   9.2  

>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 28  VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYXP 144
           VFL   +S+TV + +  GKY P  YN   + ++ F + P
Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYN--VTVIALFFFLP 168


>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2126

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 358  GSSIVPLPVVKPTISRASHTHIRCQQGGXTHIRCQQG 468
            G  I  LP+V P I     +H+  +  G    RC+QG
Sbjct: 1502 GDDIPRLPLVPPNIRDVPLSHVYSENCGNDSGRCEQG 1538


>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
          Length = 2232

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 3   CFITTGNACLFGNLPVSDSGAGRRNWKVHSFPVQP 107
           C++TTG+A L  +    D   GR  W +  F   P
Sbjct: 464 CYVTTGSAALPKDCDAGDK--GRTRWIIFDFEAMP 496


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 100 YNRVYSTVSPFVYXPGRYVADPXRYDPSRDN 192
           YNR+ +   P++  PGR   DP    P RD+
Sbjct: 670 YNRLQARDDPYIKQPGR--DDPYNKQPGRDD 698


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 103 NRVYSTVSPFVYXPGRYVADPXRYDPSRDNSGRYIPDNS 219
           N++Y  V  F Y  G ++      D + +N G  +PD S
Sbjct: 434 NQMYEGVEEFQYDDGVWLEKQIEEDENAENGGLMLPDVS 472


>SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)
          Length = 438

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 132 EWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 22
           E+R+ R NS V    +L+   G+R C+R     + T+
Sbjct: 231 EFRHRRRNSGVGTSEILTDCSGERSCKRSVTSNRSTN 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,483,039
Number of Sequences: 59808
Number of extensions: 234386
Number of successful extensions: 771
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)