Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32024
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    28   0.62 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   0.82 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   1.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   3.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   4.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   4.4  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    25   5.8  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    24   7.7  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    24   7.7  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 262 LAKKEIREKLAHLEKLENH*LMAFMLK 182
           L+K EIREKLA + K ++  + AF L+
Sbjct: 35  LSKNEIREKLAQMYKTDSECVQAFGLR 61


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
 Frame = -1

Query: 365 PSRLVLSDGVPGWPGATPDIPMAFLFGEKGDM-----GLTGEEGDKGEIGPPGETGESLI 201
           PS LV S   P  PG +  +P    F   G       G  G         P    G +L 
Sbjct: 474 PSNLVPSQNAPFIPGTSAPLPPT-TFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALP 532

Query: 200 DGIYAKGEKGYPGYPGFNGVPGRKGIRGDQGS 105
            G+ A    GYP  P   G+PG     G  GS
Sbjct: 533 PGMPAPFP-GYPAVPAMPGIPGATAPPGAPGS 563


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -1

Query: 122 RGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSGE 18
           RG  G  G+ G GG  G       G  GF GF GE
Sbjct: 183 RGHNGG-GFGGFGGGSGGPPPGPGGFGGFGGFGGE 216


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 94   QVWEVILEYRVHHNKDQRASKDLVEKKK 11
            + ++++  Y  H+NK++R   D + KK+
Sbjct: 1075 EYYDLVDPYYFHYNKNEREESDTILKKR 1102


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 149 NGVPGRKGIRGDQGSDGYPGMGGD 78
           N V G     GD+  DGYP   G+
Sbjct: 4   NEVVGSPTTNGDKNEDGYPAENGE 27


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 366 PLETSSLGWSTWMARSYSGYSD 301
           P      GW +WM  S+ G SD
Sbjct: 410 PQPPKQQGWGSWMWNSFRGASD 431


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = -1

Query: 119 GDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSGEKEEKA 3
           G  G D    MGG +G  G    G  G  GF G     A
Sbjct: 214 GAAGIDPMSLMGGGLGGAGLGGLGGAGLGGFGGANNATA 252


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 190  MLKEKKDIQDTLASMVYPGEKVFEGIRVQMGTQVWEVILE-YRVHHNKDQRASKDLVEKK 14
            +LK+K ++   L +++    K      +      W  +++  +    +++++S+D V + 
Sbjct: 1168 LLKKKDEVMAELDALIKKTPKELWLHDLDAFEHAWNKVMDDIQREMLEEEQSSRDFVNRT 1227

Query: 13   KKKP 2
            KKKP
Sbjct: 1228 KKKP 1231


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +3

Query: 135 PGYTIEARVSWISFFSFSINAIN 203
           P  T+E  +  ++++SF +NA++
Sbjct: 59  PTLTVEEELELVNYYSFQLNALS 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,792,369
Number of Sequences: 5004
Number of extensions: 35677
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)