Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32024
(401 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02670.1 68416.m00258 proline-rich family protein contains pr... 39 0.001
At5g28480.1 68418.m03462 hypothetical protein 38 0.002
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 38 0.002
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 38 0.002
At4g02450.1 68417.m00332 glycine-rich protein similar to several... 38 0.003
At1g08420.1 68414.m00931 kelch repeat-containing protein / serin... 36 0.010
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra... 33 0.054
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra... 33 0.054
At1g04660.1 68414.m00463 glycine-rich protein 33 0.054
At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ... 33 0.094
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 32 0.12
At1g15840.1 68414.m01901 expressed protein 32 0.12
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 32 0.16
At1g64450.1 68414.m07306 proline-rich family protein contains pr... 31 0.22
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 30 0.50
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 30 0.50
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 30 0.50
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 30 0.50
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 30 0.50
At1g26110.1 68414.m03186 expressed protein 30 0.66
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 29 1.2
At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family... 29 1.5
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 28 2.0
At4g19200.1 68417.m02833 proline-rich family protein contains pr... 28 2.0
At1g44222.1 68414.m05107 hypothetical protein 28 2.0
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 28 2.7
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 28 2.7
At1g06180.1 68414.m00650 myb family transcription factor identic... 28 2.7
At4g21620.1 68417.m03134 glycine-rich protein 27 3.5
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 27 3.5
At3g29080.1 68416.m03641 hypothetical protein 27 3.5
At3g13460.2 68416.m01694 expressed protein contains Pfam profile... 27 3.5
At3g13460.1 68416.m01693 expressed protein contains Pfam profile... 27 3.5
At2g34870.1 68415.m04281 hydroxyproline-rich glycoprotein family... 27 3.5
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 27 3.5
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 27 3.5
At5g46730.1 68418.m05757 glycine-rich protein 27 4.7
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont... 27 4.7
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 27 4.7
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 27 4.7
At2g27300.1 68415.m03281 no apical meristem (NAM) family protein... 27 4.7
At1g08650.1 68414.m00960 phosphoenolpyruvate carboxylase kinase ... 27 4.7
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 27 6.2
At3g51810.1 68416.m05682 Em-like protein GEA1 (EM1) identical to... 27 6.2
At3g24250.1 68416.m03044 glycine-rich protein 27 6.2
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 27 6.2
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 27 6.2
At1g54070.1 68414.m06161 dormancy/auxin associated protein-related 27 6.2
At5g41250.1 68418.m05013 exostosin family protein contains Pfam ... 26 8.2
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 26 8.2
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 26 8.2
At2g16440.1 68415.m01883 DNA replication licensing factor, putat... 26 8.2
At1g44085.1 68414.m05090 glycine-rich protein similar to glycine... 26 8.2
>At3g02670.1 68416.m00258 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 217
Score = 38.7 bits (86), Expect = 0.001
Identities = 29/93 (31%), Positives = 37/93 (39%)
Frame = -1
Query: 338 VPGWPGATPDIPMAFLFGEKGDMGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGY 159
+PG PG +P F G+ G+ G G + P G + G G PG
Sbjct: 69 IPGSPGFR--LPFPFPSSPGGNPGIPGSPGFRLPFPFPSSPGGN-------PGIPGIPGI 119
Query: 158 PGFNGVPGRKGIRGDQGSDGYPGMGGDIGIQGT 60
PG G+PG G R PG G GI G+
Sbjct: 120 PGLPGIPGSPGFRLPFPFPSSPGGGSIPGIPGS 152
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 127 PFLPGTPLKPGYPGYPFSP 183
P +PG P PG PG P SP
Sbjct: 111 PGIPGIPGIPGLPGIPGSP 129
>At5g28480.1 68418.m03462 hypothetical protein
Length = 1230
Score = 38.3 bits (85), Expect = 0.002
Identities = 26/66 (39%), Positives = 27/66 (40%)
Frame = -1
Query: 287 GEKGDMGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGVPGRKGIRGDQG 108
G G G G G GE GP G GE G GE G G G G G G GD+
Sbjct: 420 GPSGGDGEGGPSGGDGEGGPSGGDGEGGPSG--GDGEGGPNGADGEGGPNGADGEVGDEA 477
Query: 107 SDGYPG 90
D Y G
Sbjct: 478 FDKYAG 483
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 38.3 bits (85), Expect = 0.002
Identities = 26/66 (39%), Positives = 27/66 (40%)
Frame = -1
Query: 287 GEKGDMGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGVPGRKGIRGDQG 108
G G G G G GE GP G GE G GE G G G G G G GD+
Sbjct: 433 GPSGGDGEGGPSGGDGEGGPSGGDGEGGPSG--GDGEGGPNGADGEGGPNGADGEVGDEA 490
Query: 107 SDGYPG 90
D Y G
Sbjct: 491 FDKYAG 496
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 38.3 bits (85), Expect = 0.002
Identities = 26/66 (39%), Positives = 27/66 (40%)
Frame = -1
Query: 287 GEKGDMGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGVPGRKGIRGDQG 108
G G G G G GE GP G GE G GE G G G G G G GD+
Sbjct: 424 GPSGGDGEGGPSGGDGEGGPSGGDGEGGPSG--GDGEGGPNGADGEGGPNGADGEVGDEA 481
Query: 107 SDGYPG 90
D Y G
Sbjct: 482 FDKYAG 487
>At4g02450.1 68417.m00332 glycine-rich protein similar to several
proteins containing a tandem repeat region such as
Plasmodium falciparum GGM tandem repeat protein
(GB:U27807)
Length = 241
Score = 37.5 bits (83), Expect = 0.003
Identities = 35/110 (31%), Positives = 50/110 (45%)
Frame = -1
Query: 332 GWPGATPDIPMAFLFGEKGDMGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPG 153
G GA D+ MA + G G MG G G G +G G G ++G+ G G G
Sbjct: 114 GSAGAA-DMDMAGMEG-MGGMGGMGGMGGMGGMGGMGGMGG--MEGMDFSKLMG--GMGG 167
Query: 152 FNGVPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSGEKEEKA 3
G+ G +G+ G G G GMGG G++ + SG+K++ A
Sbjct: 168 MGGMGGLEGLGGMGGMGGMGGMGGMGGMEEFEDSDDEEETAKSGDKKDDA 217
>At1g08420.1 68414.m00931 kelch repeat-containing protein /
serine/threonine phosphoesterase family protein contains
Pfam profiles: PF00149 calcineurin-like phosphoesterase,
PF01344 kelch motif
Length = 1018
Score = 35.9 bits (79), Expect = 0.010
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 248 DKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGV--PGRKGIRGDQGSDGYPGMGGDI 75
DK E GP G +L + A G++G PGY G V G + G+ G G P G
Sbjct: 96 DKKEDGPGPRCGHTLT-AVPAVGDEGTPGYIGPRLVLFGGATALEGNSGGTGTPTSAGSA 154
Query: 74 GIQ 66
GI+
Sbjct: 155 GIR 157
>At2g37410.2 68415.m04588 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 33.5 bits (73), Expect = 0.054
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -1
Query: 158 PGFNGVPGRKGIRGDQGSDGYPGMGGDIGIQG 63
PG G+PG +G+ QG G PGM G G+QG
Sbjct: 148 PGMQGMPGMQGM---QGMPGMPGMQGMPGMQG 176
Score = 30.7 bits (66), Expect = 0.38
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 167 PGYPGFNGVPGRKGIRGDQGSDGYPGMGG 81
PG G G+ G +G+ G G G PGM G
Sbjct: 148 PGMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 30.7 bits (66), Expect = 0.38
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 182 GEKGYPGYPGFNGVPGRKGIRGDQGSDG 99
G +G PG G G+PG G++G G G
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 30.3 bits (65), Expect = 0.50
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 185 KGEKGYPGYPGFNGVPGRKGIRGDQ 111
+G +G PG PG G+PG +G++ Q
Sbjct: 157 QGMQGMPGMPGMQGMPGMQGMQMGQ 181
>At2g37410.1 68415.m04587 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 33.5 bits (73), Expect = 0.054
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -1
Query: 158 PGFNGVPGRKGIRGDQGSDGYPGMGGDIGIQG 63
PG G+PG +G+ QG G PGM G G+QG
Sbjct: 148 PGMQGMPGMQGM---QGMPGMPGMQGMPGMQG 176
Score = 30.7 bits (66), Expect = 0.38
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 167 PGYPGFNGVPGRKGIRGDQGSDGYPGMGG 81
PG G G+ G +G+ G G G PGM G
Sbjct: 148 PGMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 30.7 bits (66), Expect = 0.38
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 182 GEKGYPGYPGFNGVPGRKGIRGDQGSDG 99
G +G PG G G+PG G++G G G
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 30.3 bits (65), Expect = 0.50
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 185 KGEKGYPGYPGFNGVPGRKGIRGDQ 111
+G +G PG PG G+PG +G++ Q
Sbjct: 157 QGMQGMPGMPGMQGMPGMQGMQMGQ 181
>At1g04660.1 68414.m00463 glycine-rich protein
Length = 212
Score = 33.5 bits (73), Expect = 0.054
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -1
Query: 251 GDKGEIGP-PGETGESLIDGIYAKGEKGYPGYPGFNGVPGRKGIRGDQGSDGYPGMGGDI 75
GDK IG G G + + G+ G G P G G+ GI G G G+ +GG
Sbjct: 58 GDKKCIGGVAGVGGFAGVGGVAGVGGLGMPLIGGLGGIGKYGGIGGAAGIGGFHSIGGVG 117
Query: 74 GIQGTSQQGPKGFKGFSG 21
G+ G G G G G
Sbjct: 118 GLGGVG-GGVGGLGGVGG 134
>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
carotenoid isomerase from Lycopersicon esculentum
[gi:19550437]; contains Pfam profile: PF02032 Phytoene
dehydrogenase related enzyme
Length = 595
Score = 32.7 bits (71), Expect = 0.094
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 317 TPDIPMAFLFGEKGDMGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKGYPG 162
TP FL +KG G KG +G P T + IDG+Y G+ +PG
Sbjct: 501 TPRTHRRFLARDKGTYGPMPRGTPKGLLGMPFNT--TAIDGLYCVGDSCFPG 550
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 32.3 bits (70), Expect = 0.12
Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Frame = -1
Query: 281 KGDMGLTGEEGDKGEIGPPGETGESLIDGIYA-----KGEKGYPGYPGFN-----GVPGR 132
+G+ G G G +G G G G G Y +G G G G N G PG
Sbjct: 87 QGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGRGSGGRGGGGGDNSCFKCGEPGH 146
Query: 131 KGIRGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFS 24
QG GY G GG G G+ G G G S
Sbjct: 147 MARECSQGGGGYSGGGGG-GRYGSGGGGGGGGGGLS 181
>At1g15840.1 68414.m01901 expressed protein
Length = 126
Score = 32.3 bits (70), Expect = 0.12
Identities = 32/82 (39%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -1
Query: 260 GEEGDKGEIGPPGETG-ESLIDGIYAKGEKGYPGYPGFNGVPGRKGIRGDQGSDGYPGMG 84
G EG GE G G G + DGI G G G G G KG G + DG +G
Sbjct: 45 GGEGTSGEGGGGGGDGTKGGGDGISGGGHGDGLGCSGGGG-DGTKG--GGRRGDG---LG 98
Query: 83 GDIGIQGTSQQGPKGFKGFSGE 18
+G +G + G G KGFSGE
Sbjct: 99 RGLG-RGGGRGGWNGRKGFSGE 119
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 31.9 bits (69), Expect = 0.16
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 12/114 (10%)
Frame = -1
Query: 323 GATPDIPMAFLFGEKGDMGLTGEEGDKGEIG--PPGETGESLIDGIYAK------GEKGY 168
GA D+ + L G +G +G+ G G P +TG G Y G
Sbjct: 118 GAKIDLS-SLLGGGSSGLGSSGDSGSPGSDSGSPSADTGSPTDGGSYGDTTGDSGSSAGS 176
Query: 167 PGYPGFNG----VPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSGE 18
P YP +G G G D + G MGGD G + + SG+
Sbjct: 177 PSYPSDDGSGSTAGGPSGSTTDGSAGGESSMGGDSSSAGAAGESGSAATADSGD 230
>At1g64450.1 68414.m07306 proline-rich family protein contains
proline rich extensins, INTERPRO:IPR0002965
Length = 342
Score = 31.5 bits (68), Expect = 0.22
Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Frame = -1
Query: 374 PGPPSRLVLSDGVPGWPGATPDIPMAFLFGEKGDMGLTGEEGDKGEIGPPGETGESLIDG 195
PGPPS + G P +PG P P+ + + + P
Sbjct: 190 PGPPS-FPRNPGSPEFPG-NPGAPIIPRNPGSPEFPINPPRNPGAPVIPRNPNPPVFPGN 247
Query: 194 IYAKGEKGYPGY---PGFNGVPGRKGIRGDQGSDGY--PGMG 84
+ G G+PG PGF G P G G DGY PG G
Sbjct: 248 PRSMGPPGFPGIGGPPGFPGTPFGGGGTGPTLGDGYANPGFG 289
Score = 30.3 bits (65), Expect = 0.50
Identities = 36/125 (28%), Positives = 45/125 (36%), Gaps = 19/125 (15%)
Frame = -1
Query: 377 VPGPPSRLVL-----SDGVPGWPGATPDIPMAFLFGEKGDMGLTGEEG------DKGEIG 231
+PGPP V S PG+P +PD+P G G +G G + G
Sbjct: 150 IPGPPDFTVTPRNPDSPYFPGYP-ESPDLP-----GNPGSPDFSGNPGPPSFPRNPGSPE 203
Query: 230 PPGETGESLIDG--------IYAKGEKGYPGYPGFNGVPGRKGIRGDQGSDGYPGMGGDI 75
PG G +I I G P P P G G G+PG+GG
Sbjct: 204 FPGNPGAPIIPRNPGSPEFPINPPRNPGAPVIPRNPNPPVFPGNPRSMGPPGFPGIGGPP 263
Query: 74 GIQGT 60
G GT
Sbjct: 264 GFPGT 268
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 127 PFLPGTPLKPGYPGYPFSP 183
P+ PG P P PG P SP
Sbjct: 166 PYFPGYPESPDLPGNPGSP 184
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 30.3 bits (65), Expect = 0.50
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = -1
Query: 302 MAFLFGEKGDMGLT----GEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGVPG 135
MA ++ + G G G +G G G G G++ G A G Y G G+ G G
Sbjct: 1 MAGMYNQDGGGGAPIPSYGGDGYGGGGGYGG--GDAGYGGRGASGGGSYGGRGGYGGGGG 58
Query: 134 RKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKG 39
R G RG G GY GGD G +G+ G G
Sbjct: 59 R-GNRGG-GGGGY--QGGDRGGRGSGGGGRDG 86
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 30.3 bits (65), Expect = 0.50
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = -1
Query: 302 MAFLFGEKGDMGLT----GEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGVPG 135
MA ++ + G G G +G G G G G++ G A G Y G G+ G G
Sbjct: 1 MAGMYNQDGGGGAPIPSYGGDGYGGGGGYGG--GDAGYGGRGASGGGSYGGRGGYGGGGG 58
Query: 134 RKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKG 39
R G RG G GY GGD G +G+ G G
Sbjct: 59 R-GNRGG-GGGGY--QGGDRGGRGSGGGGRDG 86
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 30.3 bits (65), Expect = 0.50
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Frame = -1
Query: 197 GIYAKGEKGYPGYPGFNGVPGRKGIRG---DQGSDGYPGMG 84
G Y GYP PG+ G P G G G GYP G
Sbjct: 52 GAYPPAPGGYPPAPGYGGYPPAPGYGGYPPAPGHGGYPPAG 92
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 30.3 bits (65), Expect = 0.50
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 215 GESL-IDGIYAKGEKGYPGYPGFNGVPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKG 39
G S+ ++ ++G G G+ G G R G G GY G GG G G ++G G
Sbjct: 76 GRSITVNEAQSRGSGGGGGHRGGGGGGYRSG-----GGGGYSGGGGSYGGGGGRREGGGG 130
Query: 38 FKGFSG 21
+ G G
Sbjct: 131 YSGGGG 136
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 30.3 bits (65), Expect = 0.50
Identities = 18/51 (35%), Positives = 20/51 (39%)
Frame = -1
Query: 173 GYPGYPGFNGVPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSG 21
G G+ GF G G G G+ G GG Q Q G GF F G
Sbjct: 852 GTGGFGGFAPQGSSGGFAGAAGGGGFGGFGG----QAQGQAGGGGFSAFGG 898
>At1g26110.1 68414.m03186 expressed protein
Length = 611
Score = 29.9 bits (64), Expect = 0.66
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 167 PGYPGFNGVPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGF 27
P NG PG+ G+ G Q + GG++G G S Q P ++GF
Sbjct: 131 PDISSHNGQPGQHGM-GFQNAMPLYQPGGNLGSWGASPQPPMYWQGF 176
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 29.1 bits (62), Expect = 1.2
Identities = 32/90 (35%), Positives = 32/90 (35%)
Frame = -1
Query: 290 FGEKGDMGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGVPGRKGIRGDQ 111
FG G G G G G G G G G Y G GY G G G G G
Sbjct: 125 FGGGGYGGGGGGYGGSGGYG--GGAGGYGGSGGYGGGAGGYGGNSG-GGYGGNAA--GGY 179
Query: 110 GSDGYPGMGGDIGIQGTSQQGPKGFKGFSG 21
G G G GGD T G G G SG
Sbjct: 180 GGSGAGGYGGD----ATGHGGAGGGYGSSG 205
Score = 27.1 bits (57), Expect = 4.7
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = -1
Query: 155 GFNGVPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSG 21
GF G G G GS GY G G G G G G+ G SG
Sbjct: 124 GFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSG 168
>At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family
protein contains proline-rich protein domains,
INTERPRO:IPR000694
Length = 189
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 124 IPFLPGTPLKPGYPGYPFSPL 186
IP +PG P PG PG PF L
Sbjct: 88 IPNIPGLPNIPGLPGPPFESL 108
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 28.3 bits (60), Expect = 2.0
Identities = 27/86 (31%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Frame = -1
Query: 260 GEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFN---------GVPGRKGIRGDQG 108
G G +G G G G G Y G GY G G G PG +G
Sbjct: 89 GSSGGRGGFGG-GRGGGRGSGGGYGGGGGGYGGRGGGGRGGSDCYKCGEPGHMARDCSEG 147
Query: 107 SDGYPGMGGDIGIQGTSQQGPKGFKG 30
GY G GG G G G G+ G
Sbjct: 148 GGGYGGGGGGYGGGGGYGGGGGGYGG 173
>At4g19200.1 68417.m02833 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 179
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = -1
Query: 179 EKGYPGYPGFNGVPGRKGIRGDQG---SDGYPGMGG 81
EKG+ G+PG P +G QG GYP GG
Sbjct: 13 EKGFHGFPGGGHYPPAQGGYPPQGYPPQQGYPPAGG 48
>At1g44222.1 68414.m05107 hypothetical protein
Length = 85
Score = 28.3 bits (60), Expect = 2.0
Identities = 21/51 (41%), Positives = 23/51 (45%)
Frame = -1
Query: 173 GYPGYPGFNGVPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSG 21
G G PG G PG GI G G GM G +GI G + G G G G
Sbjct: 3 GRLGRPGMLGSPGMLGI---LGMFGISGMVGRLGILG--RLGMMGIPGMLG 48
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 27.9 bits (59), Expect = 2.7
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Frame = -1
Query: 335 PGWPGAT------PDIPMAFLFGEKGDMGLTGEEGDKGEI----GPPGETGESLIDGIYA 186
PGWPG T P + + G KGD+ E + I GPPG T +++
Sbjct: 181 PGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKE 240
Query: 185 KGEKGYPGYPGFNGVPGRKGIRGDQGSDG 99
+ E P P +G+ R +R G DG
Sbjct: 241 EPESSLP--PSMDGLL-RVHMRIVDGLDG 266
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 27.9 bits (59), Expect = 2.7
Identities = 25/89 (28%), Positives = 34/89 (38%)
Frame = -1
Query: 305 PMAFLFGEKGDMGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGVPGRKG 126
P A L G +G + G + P TG ++ + G G G PGR
Sbjct: 286 PFAALLGNQG-VTTQGSDASNNSSTPNAGTG-TIPNANPLPNPWGATG--GQTTAPGRTN 341
Query: 125 IRGDQGSDGYPGMGGDIGIQGTSQQGPKG 39
+ GD S G G+GG + G G G
Sbjct: 342 VGGDARSPGLGGLGGLGSLGGLGGLGMLG 370
>At1g06180.1 68414.m00650 myb family transcription factor identical
to GB:CAA90748 GI:1263093 from [Arabidopsis
thaliana];contains PFAM profile:PF00249
Length = 246
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 91 VWEVILEYRVHHNKDQRASKDLV 23
VW L+ R+HH++DQ +D V
Sbjct: 107 VWHTHLKKRLHHSQDQNNKEDFV 129
>At4g21620.1 68417.m03134 glycine-rich protein
Length = 131
Score = 27.5 bits (58), Expect = 3.5
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = -1
Query: 188 AKGEKGYPGYPGFNGVPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSG 21
A+ + G G GF GVPG I G +G+PG G G G GP G G G
Sbjct: 23 ARQKSGNDGL-GFGGVPGSGFIPG--FGNGFPGTGVG-GGYGGGFGGPSGGFGKGG 74
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 27.5 bits (58), Expect = 3.5
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = -1
Query: 230 PPGETGESLIDGIYAKGEKGYPGYPGFNGVPGRK--GIRGDQGSDGYPGMG-GDIGIQGT 60
P G + + G Y+ + GY + V GR G + GS GY G G GD +
Sbjct: 334 PSGYSNQGYGYGGYSGSDSGYGNQAAYGVVGGRPSGGGSNNPGSGGYMGGGYGDGSWRSD 393
Query: 59 SQQGPKG 39
QG G
Sbjct: 394 PSQGYGG 400
>At3g29080.1 68416.m03641 hypothetical protein
Length = 445
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 299 AFLFGEKGDMGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKG 171
A + G+ G E+GPPG G ++GI A+G G
Sbjct: 248 ALIRGDCPAEGAAAAAASVDEVGPPGVIGGEGLEGIGAEGNIG 290
>At3g13460.2 68416.m01694 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 664
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 194 IYAKGEK--GYPGYPGFNGVPGRKGIRGDQGSDGYP 93
+Y G++ YP Y GV GI G+ G+ YP
Sbjct: 82 VYGSGQEWTDYPAYTNPEGVDMNSGIYGENGTVVYP 117
>At3g13460.1 68416.m01693 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 667
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 194 IYAKGEK--GYPGYPGFNGVPGRKGIRGDQGSDGYP 93
+Y G++ YP Y GV GI G+ G+ YP
Sbjct: 85 VYGSGQEWTDYPAYTNPEGVDMNSGIYGENGTVVYP 120
>At2g34870.1 68415.m04281 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 116
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 127 PFLPGTPLKPGYPGYPFSPL 186
P P P PG+PG+ F PL
Sbjct: 89 PTSPPAPSLPGFPGFTFPPL 108
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 27.5 bits (58), Expect = 3.5
Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = -1
Query: 233 GPPGETGESLIDGIYAKGEKGYPGYPGFN-GVPGRKGIRGDQGSDGYPGMGGDIGIQGTS 57
G PG G G G PG PGF G PG G G G PG GG G +G
Sbjct: 8 GGPGRGGRGF--GGRGGGPGFGPGGPGFGPGGPGF-GPGGPGFGPGGPGFGGR-GPRGPG 63
Query: 56 QQGPKGFKGFSGEK 15
GP+G +SG +
Sbjct: 64 -FGPRGPGPWSGPR 76
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 101 GYPGMGGDIGIQGTSQQGPKGFKGFSG 21
GY G GG G S P GF G+ G
Sbjct: 272 GYGGYGGYGAYAGNSMVNPAGFYGYGG 298
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 27.1 bits (57), Expect = 4.7
Identities = 30/92 (32%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Frame = -1
Query: 287 GEKGDMGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGVPGRKGIRGDQG 108
G G G G G G G G G G GY G G G G G G G
Sbjct: 170 GHGGGGGGGSAGGAHGGSGYGGGEGGGAGGGGSHGGAGGYGG--GGGGGSGGGGAYGGGG 227
Query: 107 SDG--YPGMGGDIGIQGTSQQGPKGFKGFSGE 18
+ G Y GG+ G G G G G GE
Sbjct: 228 AHGGGYGSGGGEGGGYGGGAAGGYGGGGGGGE 259
>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
contains similarity to 40S ribosomal protein S10
Length = 180
Score = 27.1 bits (57), Expect = 4.7
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 182 GEKGYPGYPGFNGVPGRKGIRGDQG---SDGYPGMGGDIGIQGTSQQGPKGFKGFSG 21
GE+ + G+ G P G GD+ +D PG G G G Q +G GF G
Sbjct: 118 GERRFGDRDGYRGGPKSGGEYGDKAGAPADYQPGFRGGAG--GARQGFGRGAGGFGG 172
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 27.1 bits (57), Expect = 4.7
Identities = 29/105 (27%), Positives = 35/105 (33%)
Frame = -1
Query: 335 PGWPGATPDIPMAFLFGEKGDMGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYP 156
PG P P PM G+ G MG+ G G +GP G G G +G P
Sbjct: 329 PGGPMG-PGGPM----GQGGPMGMMGPGGPMSMMGPGGPMGPMGGQGGSYPAVQGLPMSG 383
Query: 155 GFNGVPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSG 21
G PG Y M + Q QQ G+ G
Sbjct: 384 GGGYYPGPPQASQQMNQQQYMQMMMNQQQQQQQQQQAVAHGGYGG 428
Score = 26.2 bits (55), Expect = 8.2
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -1
Query: 260 GEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGVPGR-KGI-RGDQGSDGYPGM 87
G G+ G P E +++G G G G G +P + KG+ G G DG G
Sbjct: 146 GHHGNGGGPKGPNEI-MMMMNGFKGGGGGGKKGGGGGFEIPVQMKGMGEGKNGKDGKKGK 204
Query: 86 GGDIG 72
GG+ G
Sbjct: 205 GGEKG 209
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 27.1 bits (57), Expect = 4.7
Identities = 29/105 (27%), Positives = 35/105 (33%)
Frame = -1
Query: 335 PGWPGATPDIPMAFLFGEKGDMGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYP 156
PG P P PM G+ G MG+ G G +GP G G G +G P
Sbjct: 428 PGGPMG-PGGPM----GQGGPMGMMGPGGPMSMMGPGGPMGPMGGQGGSYPAVQGLPMSG 482
Query: 155 GFNGVPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSG 21
G PG Y M + Q QQ G+ G
Sbjct: 483 GGGYYPGPPQASQQMNQQQYMQMMMNQQQQQQQQQQAVAHGGYGG 527
Score = 26.2 bits (55), Expect = 8.2
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -1
Query: 260 GEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGVPGR-KGI-RGDQGSDGYPGM 87
G G+ G P E +++G G G G G +P + KG+ G G DG G
Sbjct: 245 GHHGNGGGPKGPNEI-MMMMNGFKGGGGGGKKGGGGGFEIPVQMKGMGEGKNGKDGKKGK 303
Query: 86 GGDIG 72
GG+ G
Sbjct: 304 GGEKG 308
>At2g27300.1 68415.m03281 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 335
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 198 WHLC*RRKRISRIPWLQWCTREKRYSRGSGFRWVPRYGR*YW 73
W L K S W +C R ++Y GS R + G YW
Sbjct: 57 WDLPEESKLKSENEWFYFCARGRKYPHGSQSRRATQLG--YW 96
>At1g08650.1 68414.m00960 phosphoenolpyruvate carboxylase kinase
identical to phosphoenolpyruvate carboxylase kinase
[Arabidopsis thaliana] gi|6318613|gb|AAF06968; contains
protein kinase domain, Pfam:PF00069
Length = 284
Score = 27.1 bits (57), Expect = 4.7
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -1
Query: 347 SDGVPGWPG-ATPDIPMAFLFGEKGDMGLTGEEGDKGEIGPP---GETGESLIDGIYAKG 180
++GV G P P++ M + +GEK D+ G G P GET E + + + +G
Sbjct: 172 TEGVVGTPYYVAPEVLMGYSYGEKVDLWSAGVVLYTMLAGTPPFYGETAEEIFEAV-LRG 230
Query: 179 EKGYP 165
+P
Sbjct: 231 NLRFP 235
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 26.6 bits (56), Expect = 6.2
Identities = 29/84 (34%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Frame = -1
Query: 260 GEEGDKGEIGPPGETGESLIDGIYAKGEK--GYPGYPGFNGVPGRKGIRGDQGSDGYPG- 90
G G GE G G G G Y +GE GY G G G +G G GY G
Sbjct: 264 GYGGYGGEFGGYGGGGYGGGVGPY-RGEPALGYSGRYGGGGGGYNRGGYSMGGGGGYGGG 322
Query: 89 ----MGGDIGIQGTSQQGPKGFKG 30
GG G G GP G G
Sbjct: 323 PGDMYGGSYGEPGGGYGGPSGSYG 346
Score = 26.2 bits (55), Expect = 8.2
Identities = 23/61 (37%), Positives = 25/61 (40%)
Frame = -1
Query: 200 DGIYAKGEKGYPGYPGFNGVPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSG 21
DG Y G G GY G G G G S GY G GG+ G G G G + G
Sbjct: 234 DG-YGGGHGG--GYGGPGGPYKSGGGYGGGRSGGYGGYGGEFGGYGGGGYG-GGVGPYRG 289
Query: 20 E 18
E
Sbjct: 290 E 290
>At3g51810.1 68416.m05682 Em-like protein GEA1 (EM1) identical to
SP|Q07187 Em-like protein GEA1 (EM1) {Arabidopsis
thaliana}; contains Pfam profile PF00477: Small
hydrophilic plant seed protein
Length = 152
Score = 26.6 bits (56), Expect = 6.2
Identities = 21/76 (27%), Positives = 31/76 (40%)
Frame = -1
Query: 260 GEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGVPGRKGIRGDQGSDGYPGMGG 81
G + K ++G G G K + G+ GY G G + + G +GY MG
Sbjct: 44 GGQTRKEQLGHEGYQEIGHKGGEARKEQLGHEGYQEM-GHKGGEARKEQLGHEGYQEMGH 102
Query: 80 DIGIQGTSQQGPKGFK 33
G Q G +G+K
Sbjct: 103 KGGEARKEQLGHEGYK 118
>At3g24250.1 68416.m03044 glycine-rich protein
Length = 137
Score = 26.6 bits (56), Expect = 6.2
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Frame = -1
Query: 194 IYAKGEKGYPGYPGFNGVPGR-KGIRGDQ-----------GSDGYPGMGGDIGIQGTSQQ 51
IY G G G GF G+PG G G G+ G G+GG +G G
Sbjct: 63 IYGGGIGGVAGVGGFMGMPGGGSGGSGMTFPLPSGTPLLGGAGGLGGLGGAMGFPGGLGG 122
Query: 50 GPKG 39
GP G
Sbjct: 123 GPSG 126
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 26.6 bits (56), Expect = 6.2
Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Frame = -1
Query: 278 GDMGLTGEEGDKGEIGPPGETGESLIDGI-YAKGEKGYPGYPGFNGVPGRKGIRGDQGSD 102
G G G G G G G E +D Y + + GYP + G G
Sbjct: 198 GGRGSGGAGGFPGYGGSGGSGYEGRVDSNRYMQPQNTGSGYPPYGGSGYGTGYGYGSNGV 257
Query: 101 GYPGMGG 81
GY G GG
Sbjct: 258 GYGGFGG 264
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = -2
Query: 175 KDIQDTLASMVYPGEKVFEGIRVQMGTQVWEVILEYRV----HHNKDQRASKDLVEKKKK 8
KD+ ++ + E ++E ++ QMG++++E + + RV N+ +R ++L K+ +
Sbjct: 1020 KDLDESSFEISLFAESLYEMLQYQMGSRIFEFLKKLRVKIVRQRNQRKRHQEELSVKQNE 1079
>At1g54070.1 68414.m06161 dormancy/auxin associated protein-related
Length = 123
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 136 PGTPLKPGYPGYPFSP 183
PGTPL PG P Y P
Sbjct: 78 PGTPLTPGTPCYALGP 93
>At5g41250.1 68418.m05013 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 561
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = -2
Query: 307 FRWLFFSVKKEIWV*LAKKEIREKLAHLEKLENH*LMAFMLKEKKDIQDTLASMVYPG 134
+ W ++ V +++++++EK ++ ++ L A LKEKKD++ + + PG
Sbjct: 475 YAWHLPEDHRKYSVYISEQDVKEKRVNVVEI----LKAKTLKEKKDMKSYIVQQLLPG 528
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 260 GEEGDKGEIGPPGETGES 207
G + D+GE GPPG + ES
Sbjct: 389 GMDTDEGEEGPPGSSNES 406
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 26.2 bits (55), Expect = 8.2
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -1
Query: 167 PGYPGFNGVPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSGEKEEKA 3
PG G G+P G + + YPG G G QG Q G +G +G + A
Sbjct: 391 PGAVG--GMPSGYGTQANISPGVYPGYGAQAGYQGGYQTQQPG-QGGAGRGQHGA 442
>At2g16440.1 68415.m01883 DNA replication licensing factor, putative
similar to SP|P49717 DNA replication licensing factor
MCM4 (CDC21 homolog) {Mus musculus}, SP|P29458 Cdc21
protein {Schizosaccharomyces pombe}; contains Pfam
profile PF00493: MCM2/3/5 family
Length = 847
Score = 26.2 bits (55), Expect = 8.2
Identities = 22/57 (38%), Positives = 25/57 (43%)
Frame = -1
Query: 374 PGPPSRLVLSDGVPGWPGATPDIPMAFLFGEKGDMGLTGEEGDKGEIGPPGETGESL 204
P PPSRL S+ P P + P A G G G G G G+ G P T E L
Sbjct: 53 PPPPSRLASSNSTP--PTSRPS--AARSKGRNGHGG-GGGGGGGGDPGTPMSTDEPL 104
>At1g44085.1 68414.m05090 glycine-rich protein similar to
glycine-rich protein GI:18147 from [Chenopodium rubrum]
Length = 90
Score = 26.2 bits (55), Expect = 8.2
Identities = 20/64 (31%), Positives = 24/64 (37%)
Frame = -1
Query: 272 MGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGVPGRKGIRGDQGSDGYP 93
+G G D G IG G + Y Y G NG G G QG+ G
Sbjct: 14 VGYQGNPADSGGIGNVNSGGYQVNQNSYKNSGGYYQGNQATNGNSG--GYSPYQGTQGL- 70
Query: 92 GMGG 81
G+GG
Sbjct: 71 GVGG 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,764,400
Number of Sequences: 28952
Number of extensions: 210941
Number of successful extensions: 820
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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