Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32022
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   5.7  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   5.7  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    24   9.9  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    24   9.9  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    24   9.9  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 140  LQMEEAVKVFRVLYYAKDFD 199
            L +E      R +YY+KDFD
Sbjct: 1164 LNLESKSTTLRTIYYSKDFD 1183


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 28/106 (26%), Positives = 48/106 (45%)
 Frame = -1

Query: 388 SHLHHKGFTDDMAVNEXVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSP 209
           ++LH   F+   A    VGI   RS Q E L V ++ A       E+  VD  + P+ + 
Sbjct: 194 TYLHKNSFSITRASQPLVGIRQNRSAQDEKL-VEAIFATSIIPGKENLIVD--ARPSTNA 250

Query: 208 HENIEVLSVVEDSEDFDGFFHLELVGVDEGLLPRGSMPILIHPXMN 71
             NI V +  E+ + +  F     +G+D   + R S+  +++   N
Sbjct: 251 MANIAVGAGSENMDHY-RFAKKIYLGIDNIHVMRDSLNKIVNALKN 295


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 259 VDEHASVDPFSHPARSPHEN 200
           +DEHA   PF  P+  P+ N
Sbjct: 379 IDEHALAKPFFRPSLVPYFN 398


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 211 PHENIEVLSVVEDSEDFDGFFHL 143
           PH+ +++LS VE  +D+    HL
Sbjct: 284 PHKGVDILSEVEAVKDWSKRLHL 306


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 282 TEPTARVSTCPLLTRSIPTXSLTAMSSVKPL 374
           T+PT   S  PL+T S+P  S+ A+  ++ +
Sbjct: 418 TQPT-NASPAPLVTPSLPVPSIPAVPGMEAM 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,196
Number of Sequences: 5004
Number of extensions: 29743
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)