Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32022
         (466 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   3.3  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         28   4.4  
SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         27   5.8  
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)                  27   5.8  
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 310  QVETLAV-GSVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLELV 134
            Q  T+A+  S E  G +  + +   +P++        ++    + ++S D+DGF      
Sbjct: 2065 QGSTVALFDSTEQLGKQDYNLYDRYNPYNRSLDLTDGSVHKFGM-DESSDWDGFLRTYSR 2123

Query: 133  GVDEGLLPRGSM 98
              D GLLPR S+
Sbjct: 2124 SKDSGLLPRKSL 2135


>SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 205 ENIEVLSVVEDSEDFDGFFHLELVGVDEGLLPRGSMPILIHPXMNCLTT 59
           +N+E + V + S   +G  +L  + +DEGL+          P MN + T
Sbjct: 10  DNLETIGVADPSRRQNGIGYLSSISMDEGLMNNNPKREQPTPIMNGIAT 58


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 212 TACWMRERINGGMFVYAFTAACFHR 286
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 258 TLLLPRASTEPTARVSTCPLLTRSIPTXSLT 350
           +LLLP      +A   T PLL++SIP+ S T
Sbjct: 208 SLLLPDMPITSSAMAPTFPLLSQSIPSMSTT 238


>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 119 TFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTAA 274
           T VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA+
Sbjct: 226 TLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTAS 280


>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
          Length = 336

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 176 LYYAKDFDVFMRTACWMRERINGGMFVYAFTAACFHRTD 292
           L+  ++F+V   T C + ER N      + +  CF+  D
Sbjct: 70  LFLVRNFEVAKVTVCCLHERSNAHCSKMSLSCVCFNHED 108


>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 234 GSTEACSSTLLLPRASTEPTARVSTCPLLTRSIPTXSLTAMSS 362
           G+TEA SS  ++  AST  T   +T      + PT +  A  S
Sbjct: 316 GTTEALSSQSVISNASTTSTTSATTIAATGATTPTDTTQATPS 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,470,343
Number of Sequences: 59808
Number of extensions: 238803
Number of successful extensions: 621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)