Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32022
(466 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta... 30 0.89
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa... 28 2.7
At5g16240.1 68418.m01897 acyl-[acyl-carrier-protein] desaturase,... 28 3.6
At5g33210.1 68418.m03923 zinc finger protein-related similar to ... 27 6.2
At5g10120.1 68418.m01172 ethylene insensitive 3 family protein c... 27 6.2
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 27 6.2
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 27 6.2
At2g45640.1 68415.m05675 sin3 associated polypeptide p18 family ... 27 8.3
>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
protein contains Pfam profile PF00226: DnaJ domain
Length = 2554
Score = 29.9 bits (64), Expect = 0.89
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -1
Query: 313 GQVETLAVGSVEAR--GSKSVDEHASVDPFSHPARSPHENIEV 191
G+ ET++ G V+A GS V+E S DP S P ++P E + +
Sbjct: 2332 GRRETMSSGEVKAEEIGSDGVNE--STDPSSLPGQTPQERVRL 2372
>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 717
Score = 28.3 bits (60), Expect = 2.7
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -1
Query: 352 AVNEXVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFS-HPARSPHENIEVLSVVE 176
AVN G D +R ++ + G ++ + DE + P S + HE+ E VE
Sbjct: 197 AVNNNFGSDPIRRPEIREIKTG--KSLRVYNDDEPLAYSPVSLAQINTIHESDEN-DDVE 253
Query: 175 DSEDFDGFF 149
D +DF GFF
Sbjct: 254 DDDDFPGFF 262
>At5g16240.1 68418.m01897 acyl-[acyl-carrier-protein] desaturase,
putative / stearoyl-ACP desaturase, putative similar to
Acyl-[acyl-carrier protein] desaturase from Sesamum
indicum GI:575942, Cucumis sativus SP|P32061, Ricinus
communis SP|P22337; contains Pfam profile PF03405 Fatty
acid desaturase
Length = 394
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 131 CGRRSXTTREHAHPYTSXHELLNDIDIHVLVATFXRML 18
CG + R H H YT E L +ID V F M+
Sbjct: 252 CGTIAADERRHEHAYTKIVEKLFEIDPDTTVVGFADMM 289
>At5g33210.1 68418.m03923 zinc finger protein-related similar to
lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
GI:882341; contains Pfam profile PF05142: Domain of
unknown function (DUF702), TIGR01623: putative zinc
finger domain, LRP1 type
Length = 173
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 177 RTRKTLTASSIWSSLVWTKVXYHAGAC 97
R R+ L A+S SSLV T++ +H+G C
Sbjct: 118 RHRENLPATS--SSLVCTRIPFHSGIC 142
>At5g10120.1 68418.m01172 ethylene insensitive 3 family protein
contains Pfam profile: PF04873 ethylene insensitive 3
Length = 471
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = -3
Query: 134 WCGRRSXTTREHAHPYTSXHELLNDIDIHVLVATFXRMLYSLG 6
W G + A PY H+L + VL A M +LG
Sbjct: 199 WWGEQGAAHEHGAPPYRKPHDLRKSWKVSVLAAVIKHMSPNLG 241
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 119 TFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 241
TF HT N ++ + FRV + D ++ T C+ R N
Sbjct: 496 TFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 119 TFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 241
TF HT N ++ + FRV + D ++ T C+ R N
Sbjct: 496 TFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537
>At2g45640.1 68415.m05675 sin3 associated polypeptide p18 family
protein similar to Sin3 associated polypeptide p18
(2HOR0202) (Swiss-Prot:O00422) [Homo sapiens]
Length = 152
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 270 PRASTEPTARVSTCPLLTR 326
PR EP R TCPLL R
Sbjct: 26 PRPKPEPVDREKTCPLLLR 44
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,248,893
Number of Sequences: 28952
Number of extensions: 162752
Number of successful extensions: 368
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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