Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32020
(323 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 43 1e-05
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 42 2e-05
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 2.8
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 25 3.7
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 24 4.9
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 24 6.5
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 24 6.5
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 23 8.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 23 8.6
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 42.7 bits (96), Expect = 1e-05
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 69 LRRVKENERLLXGKPRLPASTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 224
L RVK NE + + TV L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 106 LDRVKANEAKRK-EAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157
Score = 37.5 bits (83), Expect = 5e-04
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +1
Query: 13 RINIRVEHVKHSKCRQ 60
R+N+R+EHVKHSKCRQ
Sbjct: 88 RVNVRIEHVKHSKCRQ 103
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 42.3 bits (95), Expect = 2e-05
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 69 LRRVKENERLLXGKPRLPASTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 224
L RVK NE + + TV L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 106 LDRVKANEAKRK-EAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
Score = 37.5 bits (83), Expect = 5e-04
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +1
Query: 13 RINIRVEHVKHSKCRQ 60
R+N+R+EHVKHSKCRQ
Sbjct: 88 RVNVRIEHVKHSKCRQ 103
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 2.8
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 54 QTRTSLRRVKENERLLXGKPRLPASTVNLKRQPAPPKAAHIVSGTEKPVL 203
Q ++ ++ KE + L + ST + QP P SGTE V+
Sbjct: 263 QKKSKAKKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 35 MSSTPSADKDFLKESQRE*EATXRXAKAAGKYRQPEE 145
M PSAD FL +++RE + A+ ++ + +E
Sbjct: 96 MGKDPSADTSFLPDAEREIRENAKRAEYRKQWLKEQE 132
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 24.2 bits (50), Expect = 4.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 39 QALQVQTRTSLRR---VKENERLLXGKPRLPASTVNLKRQP 152
+A + T +S R+ VK+NE+LL P S + QP
Sbjct: 62 EATENPTASSYRKDDSVKQNEKLLHSNPTFKISKPTVLEQP 102
>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 572
Score = 23.8 bits (49), Expect = 6.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 147 QPAPPKAAHIVSGTEKPVLLA 209
Q A +A IV+G +KPVLLA
Sbjct: 207 QMAVDISAKIVNGKQKPVLLA 227
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 23.8 bits (49), Expect = 6.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 39 QALQVQTRTSLRRVKENERLLXGKPR 116
Q LQ TSL RVK N + PR
Sbjct: 756 QRLQQSISTSLERVKSNTKKESNSPR 781
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 23.4 bits (48), Expect = 8.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 50 SADKDFLKESQRE*EATXRXAKAAGKYRQPEET 148
S D ++ K ++RE R A+A G Y P+ET
Sbjct: 58 SYDAEYRK-AEREQIELGRKARAEGNYYVPDET 89
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 23.4 bits (48), Expect = 8.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 111 PRLPASTVNLKRQPAPPKAAHIVSGTEKPVLLAPIP 218
P+ PA+ V P PP A+ S E P + P P
Sbjct: 1012 PKQPANRV----VPLPPTASQRASAYEPPTVSVPSP 1043
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,179,200
Number of Sequences: 5004
Number of extensions: 19538
Number of successful extensions: 66
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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