Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32020
(323 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6) 29 0.66
SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07) 28 1.5
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.5
SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8) 28 2.0
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 27 4.6
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38) 26 6.1
SB_41191| Best HMM Match : PadR (HMM E-Value=8.6) 26 8.1
SB_4456| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30) 26 8.1
SB_24433| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
SB_7440| Best HMM Match : fn3 (HMM E-Value=0.35) 26 8.1
>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
Length = 305
Score = 29.5 bits (63), Expect = 0.66
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 132 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 224
VN + PP A + ++ ++PVL P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160
>SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07)
Length = 352
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +3
Query: 105 GKPRLPASTVNL--KRQPAPPKAAHIVSGTEKP-VLLAPIP 218
G P+LP N K++ APP H+VS ++P + AP P
Sbjct: 206 GLPQLPRPRTNSSNKKKSAPPLPKHVVSPVKRPNKVKAPPP 246
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +3
Query: 105 GKPRLPASTVNL--KRQPAPPKAAHIVSGTEKP-VLLAPIP 218
G P+LP N K++ APP H+VS ++P + AP P
Sbjct: 206 GLPQLPRPRTNSSNKKKSAPPLPKHVVSPVKRPNKVKAPPP 246
>SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8)
Length = 125
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 124 QVPST*RDSQLPLKLPTSSVELRNPSYL 207
Q+ T ++S LPL++ SV+LR +YL
Sbjct: 94 QIKRTEKESDLPLQVQIKSVQLRRVTYL 121
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3
Query: 105 GKPRLPASTVNLKRQPAPPKAAHIVSGTEKPVLLAPIP 218
G P +P + ++ PAPP + ++ P+ P+P
Sbjct: 216 GSPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLP 253
>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2839
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +3
Query: 99 LXGKPRLPASTVNLKRQPAPPKAAHIVSGTEK--PVLLAPIPYEFVA*SPIKY 251
L P +T+ + AP K + S K PV AP+ Y V +P+KY
Sbjct: 920 LHSTPAEDGATIEHALESAPVKYTPVESAPVKYTPVESAPVKYTPVESAPVKY 972
>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
Length = 450
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 120 PASTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA*SP 242
PA + QP P I + P +++P P +F+A SP
Sbjct: 189 PAPHPSPASQPVAPSPVCIPVQSPAPNMMSPSPQQFIAQSP 229
>SB_41191| Best HMM Match : PadR (HMM E-Value=8.6)
Length = 276
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 203 TCAYPIRIRSVKSNKIFLRTKKKKKNSRGGPV 298
+C++P S KS I TK+ + N+ P+
Sbjct: 38 SCSFPENATSTKSKLIHSNTKRDRNNNLSAPM 69
>SB_4456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 25.8 bits (54), Expect = 8.1
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +3
Query: 42 ALQVQTRTSLRRVKENERLLXGKPRLPASTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPY 221
++ V+ R S K + +L G P P + P PPK H VS VLL IP
Sbjct: 121 SVYVEARNSAGVAKSEQLVLTG-PVFPE-----QMNPGPPKDLHAVSQGGGEVLLKWIPR 174
Query: 222 EFVA*SPIKY 251
+ +KY
Sbjct: 175 DLWQSYTMKY 184
>SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)
Length = 1084
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 235 YATNSYGIGASKTGFSVPLTMW 170
YA +SY IGA+ T SV L+ W
Sbjct: 286 YAGHSYRIGAAITAASVGLSPW 307
>SB_24433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 62 PCLHLECLTCSTRILM 15
PC H+ C +C TR LM
Sbjct: 444 PCRHVSCRSCITRHLM 459
>SB_7440| Best HMM Match : fn3 (HMM E-Value=0.35)
Length = 602
Score = 25.8 bits (54), Expect = 8.1
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +3
Query: 42 ALQVQTRTSLRRVKENERLLXGKPRLPASTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPY 221
++ V+ R S K + +L G P P + P PPK H VS VLL IP
Sbjct: 96 SVYVEARNSAGVAKSEQLVLTG-PVFPE-----QMNPGPPKDLHAVSQGGGEVLLKWIPR 149
Query: 222 EFVA*SPIKY 251
+ +KY
Sbjct: 150 DLWQSYTMKY 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,197,603
Number of Sequences: 59808
Number of extensions: 160096
Number of successful extensions: 539
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -