Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32020
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...    37   0.004
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   0.58 
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    28   1.8  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    28   1.8  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    28   1.8  
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical p...    26   5.4  
AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    26   5.4  
AF067209-1|AAC16982.2|  553|Caenorhabditis elegans Warthog (hedg...    26   7.2  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    25   9.5  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +1

Query: 1   IIPXRINIRVEHVKHSKCR 57
           I+P RINIR+EH+K SKCR
Sbjct: 84  ILPKRINIRIEHIKPSKCR 102



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 69  LRRVKENERLLXGKPRLPASTVNLKRQPAPPKAAH-IVSGTEKPVLLAPIPYEFVA 233
           L RVK N+               LKR P  P+ AH + +   +P LLAP+ +E VA
Sbjct: 106 LNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIVA 161


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 135 NLKRQPAPPKAAHIVSGTE 191
           NL+R+PAPPK  H+ S  E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480


>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
            presynaptic activity protein.
          Length = 1409

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
 Frame = +3

Query: 87   NERLLXGKPRLPASTVNLKRQPAP------PKAAH---IVSGTEKPVLLAPIP 218
            N+ L   +P+LPAST++L+    P      P + +   I   T  P L  P+P
Sbjct: 917  NDILKESRPKLPASTIDLRTPTKPLGQNVTPTSTNNHEIAQSTRSPALPPPVP 969


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform b protein.
          Length = 1408

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
 Frame = +3

Query: 87   NERLLXGKPRLPASTVNLKRQPAP------PKAAH---IVSGTEKPVLLAPIP 218
            N+ L   +P+LPAST++L+    P      P + +   I   T  P L  P+P
Sbjct: 917  NDILKESRPKLPASTIDLRTPTKPLGQNVTPTSTNNHEIAQSTRSPALPPPVP 969


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform a protein.
          Length = 1409

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
 Frame = +3

Query: 87   NERLLXGKPRLPASTVNLKRQPAP------PKAAH---IVSGTEKPVLLAPIP 218
            N+ L   +P+LPAST++L+    P      P + +   I   T  P L  P+P
Sbjct: 917  NDILKESRPKLPASTIDLRTPTKPLGQNVTPTSTNNHEIAQSTRSPALPPPVP 969


>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
           protein C06C3.1b protein.
          Length = 1019

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 33  ACQALQVQTRTSLRRVKENERLLXGKPRLPASTVNLKRQPAPPKAAH 173
           A  ++  +T  S  R KEN   +    +  ++T+ +    APPKA H
Sbjct: 510 AAGSVHTETPRSSMRFKENSSSVGSGDQNVSATIPIVPLSAPPKAVH 556


>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
           protein C06C3.1b protein.
          Length = 1019

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 33  ACQALQVQTRTSLRRVKENERLLXGKPRLPASTVNLKRQPAPPKAAH 173
           A  ++  +T  S  R KEN   +    +  ++T+ +    APPKA H
Sbjct: 510 AAGSVHTETPRSSMRFKENSSSVGSGDQNVSATIPIVPLSAPPKAVH 556


>Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical
           protein R186.1 protein.
          Length = 276

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 200 DGFLSSTDDVGSFRGSWLSLQVDG 129
           DG LS  D   + RG+WL L  +G
Sbjct: 39  DGILSGVDKQENARGTWLGLNENG 62


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 57  TRTSLRRVKENERLLXGKPRLPASTVNLKRQPAPPKAAHIVSGTE 191
           T T L    E+ R L   PR+ +ST+NL +Q    K   +V G++
Sbjct: 146 TNTRLVIWIESARALLDMPRIVSSTLNLHKQAGFFKLDAVVFGSD 190


>Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical
           protein ZC410.1b protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 206 CAYPIRIRSVKSNKIFLRTKKKKKNSRGGPVPNSP 310
           C   I +RS + N    R K  + NS   P  NSP
Sbjct: 8   CISTIIVRSKRENFACTRRKDSRNNSDAAPNSNSP 42


>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 200 DGFLSSTDDVGSFRGSWLSLQVDG 129
           DG LS  D+    RG+WL +   G
Sbjct: 39  DGMLSGVDEKDVARGTWLGMDAHG 62


>AF067209-1|AAC16982.2|  553|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 9 protein.
          Length = 553

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
 Frame = +3

Query: 48  QVQTRTSLRRVKE--NERLLXGKPRLPASTVNLKRQPAPPKAAHIVSGTE-----KPVLL 206
           Q   R   RRV +    R+L  KPR+  +T  +    APP    +   T+      P + 
Sbjct: 297 QETPRAPPRRVHQPYTRRILTPKPRIVHTTTVMPTTHAPPVQVQVEPVTQPTPPPNPFVF 356

Query: 207 APIP 218
           AP+P
Sbjct: 357 APLP 360


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
           protein 4 protein.
          Length = 2325

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 75  RVKENERLLXGKPRLPASTVNLKRQPAPPKAAHIVSGTEKP 197
           RV  + +   GKP LP+ +V + +QP      ++ +    P
Sbjct: 727 RVVASNKHGPGKPSLPSYSVTMPQQPPSAAPRNVAASARSP 767


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,671,340
Number of Sequences: 27780
Number of extensions: 114907
Number of successful extensions: 366
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)