Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32020
(323 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 29 0.94
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 29 0.94
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 29 0.94
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 29 0.94
At3g52020.1 68416.m05706 serine carboxypeptidase S10 family prot... 27 3.8
At1g75680.1 68414.m08792 glycosyl hydrolase family 9 protein sim... 27 3.8
At4g04155.1 68417.m00587 expressed protein 26 6.7
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa... 25 8.8
At3g09080.1 68416.m01067 transducin family protein / WD-40 repea... 25 8.8
At1g43780.1 68414.m05043 serine carboxypeptidase S10 family prot... 25 8.8
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 28.7 bits (61), Expect = 0.94
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 1 IIPXRINIRVEHVKHSKCRQ 60
II RI++RVEHV+ S+C +
Sbjct: 84 IIRKRIHVRVEHVQQSRCAE 103
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 28.7 bits (61), Expect = 0.94
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 1 IIPXRINIRVEHVKHSKCRQ 60
II RI++RVEHV+ S+C +
Sbjct: 84 IIRKRIHVRVEHVQQSRCAE 103
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 28.7 bits (61), Expect = 0.94
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 1 IIPXRINIRVEHVKHSKCRQ 60
II RI++RVEHV+ S+C +
Sbjct: 84 IIRKRIHVRVEHVQQSRCAE 103
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 28.7 bits (61), Expect = 0.94
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 1 IIPXRINIRVEHVKHSKCRQ 60
II RI++RVEHV+ S+C +
Sbjct: 84 IIRKRIHVRVEHVQQSRCAE 103
>At3g52020.1 68416.m05706 serine carboxypeptidase S10 family protein
similar to SP|P52711 Serine carboxypeptidase II-3
precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam
profile PF0450 serine carboxypeptidase
Length = 501
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 220 YGIGASKTGFSVPLTMWAALGGAGC 146
Y + A+KT S+PL +W GG GC
Sbjct: 111 YFVEATKTKKSLPLVLWLN-GGPGC 134
>At1g75680.1 68414.m08792 glycosyl hydrolase family 9 protein
similar to endo-beta-1,4-glucanase GB:AAC12685
GI:3025470 from [Pinus radiata]
Length = 525
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 254 LRTKKKKKNSRGGPVPNSP 310
LRTKK + GGPVP P
Sbjct: 33 LRTKKSGDDDGGGPVPGPP 51
>At4g04155.1 68417.m00587 expressed protein
Length = 142
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 114 RLPASTVNLKRQPAPPKAAHIVSGTEKPVL 203
R+P +TV+++ P PP + T VL
Sbjct: 5 RIPGNTVDVEGNPIPPNQTDVPEATAPAVL 34
>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
family protein contains Pfam PF03126: Plus-3 domain;
contains Pfam PF02201: BAF60b domain of the SWIB
complex; contains Pfam PF00628: PHD-finger domain;
contains Prosite Zinc finger, C3HC4 type (RING finger),
signature; similar to CPRF interacting protein
(GI:9588690) [Petroselinum crispum]
Length = 571
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 60 RTSLRRVKENERLLXGKPRLPASTVNLKRQPAPPKAAH 173
R L + E ERLL PR+ + +K++P +H
Sbjct: 527 RELLEKPSEQERLLKEIPRIIEDFIEIKQEPCVGGLSH 564
>At3g09080.1 68416.m01067 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats; similar to
JNK-binding protein JNKBP1 (GP:6069583) [Mus musculus]
Length = 1026
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/82 (20%), Positives = 36/82 (43%)
Frame = +2
Query: 29 LSMSSTPSADKDFLKESQRE*EATXRXAKAAGKYRQPEETASSP*SCPHRQWN*ETRLTC 208
L + +TP+ F+K+ + E T A ++Q + + S + + + + R +
Sbjct: 814 LDLLNTPNIQASFIKQQKPENFCTKHSAGQGDMFKQFDNSLSIIDNVEAEKSSQQRRYSS 873
Query: 209 AYPIRIRSVKSNKIFLRTKKKK 274
+ +R + K F RT +K
Sbjct: 874 QFVLRRDYIGGTKQFTRTPSQK 895
>At1g43780.1 68414.m05043 serine carboxypeptidase S10 family protein
similar to serine carboxylase II-3 GB:CAA55478 GI:474392
from [Hordeum vulgare]
Length = 479
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 220 YGIGASKTGFSVPLTMWAALGGAGC 146
Y + A K S PLT+W GG GC
Sbjct: 69 YFVEAEKQPHSKPLTLWLN-GGPGC 92
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,353,320
Number of Sequences: 28952
Number of extensions: 109415
Number of successful extensions: 348
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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