Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32018
         (357 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   2.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   2.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   2.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   5.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   5.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   5.0  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    20   8.7  

>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -2

Query: 266 CSCSGSGLPPPGRASSGVXGLPRLPSQHG 180
           C   G   P PG  S  V G P + S HG
Sbjct: 131 CLSGGPKHPDPG--SLQVPGAPMMMSSHG 157


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 278 PAPVCSCSGSGLPPPGRASSGVXGLPRLP 192
           P P     G  LPP G   +    LP++P
Sbjct: 153 PNPSIIDPGPALPPAGFLCNNYLPLPQVP 181


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 278 PAPVCSCSGSGLPPPGRASSGVXGLPRLP 192
           P P     G  LPP G   +    LP++P
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVP 181


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -2

Query: 290 GPCWPAPVCSCSGSGLPPPGRASSGV 213
           G   P PV   S  GL P G   + +
Sbjct: 99  GAAGPIPVSMASKMGLAPTGHPGAAL 124


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 205 SPXTPEEARPGGGRPDPEQEQTG 273
           +P T      GGG P P    TG
Sbjct: 283 NPGTYINKEAGGGSPGPYTNATG 305


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 197 NEEVRELQKKLAQVEED 247
           N+E+R  ++K  +VEED
Sbjct: 98  NQEIRGPKRKTWKVEED 114


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 200 EEVRELQKKLAQVEEDLILNKNKL 271
           +E++++QK LA V+++     NK+
Sbjct: 83  QEMKQIQKVLAFVQKNYPKEWNKI 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,626
Number of Sequences: 336
Number of extensions: 1326
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7193380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)