Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32017
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0545 - 4756266-4757510 31 0.55
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990... 29 1.7
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 29 1.7
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 29 1.7
02_01_0558 + 4109929-4110042,4110989-4111097,4111404-4111563,411... 28 3.9
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550... 27 6.8
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413... 27 6.8
07_03_1434 + 26529043-26529927,26530385-26530742,26530820-265310... 27 8.9
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 27 8.9
>05_01_0545 - 4756266-4757510
Length = 414
Score = 31.1 bits (67), Expect = 0.55
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 140 CKPS**YLRWRRQCS*VYRTSPR*CASFQ-QLYVPAP 33
C P+ Y R RQC+ Y P CA+FQ + +VP+P
Sbjct: 346 CLPNRPYQRTPRQCAAFYAAPPVDCAAFQCKPFVPSP 382
>12_01_0977 -
9900073-9900521,9900594-9900698,9900770-9900959,
9901035-9901093,9901297-9901688,9901770-9902059,
9902146-9903030
Length = 789
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 128 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLR 256
K+ K+ ERIA+L+D ++L K + ++ + Q+ LR
Sbjct: 580 KKTEKELRERIAQLQDSNYELSGSSKAQAARMAQMEKQIEALR 622
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 131 RVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 253
R+C E+IA +E E D+E I+ ++ ++ N + D+
Sbjct: 649 RLCTSLGEKIAEMESEIADMERIISQRTRDMKKPNDKREDI 689
>02_01_0459 +
3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 107 DANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 253
D ED K++ K + L D+K +E I+ K E+ ++S+VNDL
Sbjct: 99 DEKEDHEKQL-KQIRLDMEALRDDKTQMEVILDEKIDEVRKISSKVNDL 146
>02_01_0558 +
4109929-4110042,4110989-4111097,4111404-4111563,
4111721-4111796,4111984-4112109,4112233-4112484
Length = 278
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 152 ERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRG 259
+R+ R+ + KRK ++DL SQV+ LRG
Sbjct: 124 KRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRG 159
>03_02_0080 +
5498638-5498699,5499121-5499190,5499551-5500711,
5500940-5501029,5501147-5501464
Length = 566
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 42 NVKLLKGGASSRRGAVNLRTLTTPT 116
N K KGGAS+ + A + RT T PT
Sbjct: 504 NGKAKKGGASTPKKAAHRRTTTVPT 528
>03_01_0555 +
4132630-4132923,4133514-4133771,4134125-4134249,
4134789-4134990,4135172-4135297,4135404-4135660,
4135968-4136075,4136142-4136310,4136378-4136543,
4136967-4136998,4137256-4137579,4137683-4137757,
4138093-4138162,4138228-4138385,4138872-4139021
Length = 837
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 119 DTIKRVCKDYHERIARLEDEKFDLEYIV 202
+T ++C+ Y E A + KFDL YIV
Sbjct: 643 ETGPKICQKYIECPALFQGRKFDLRYIV 670
>07_03_1434 +
26529043-26529927,26530385-26530742,26530820-26531007,
26531082-26531271,26531343-26531447,26531521-26531597,
26531628-26531972
Length = 715
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 143 DYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 253
D +RIA L++ F+L K + +IS L Q+ L
Sbjct: 520 DLRDRIAELQESNFELSGSSKVQAAKISQLEKQIQTL 556
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 390 EEEDKXKKPDWSXGXPGDHNVKXEEXA 470
EEE++ ++P W G GD + EE A
Sbjct: 14 EEEEEEEEPGWDDGGGGDTMLVEEEAA 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,010,705
Number of Sequences: 37544
Number of extensions: 152322
Number of successful extensions: 399
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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