Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32016
         (314 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738...    26   5.4  
11_05_0035 - 18509505-18509615,18509840-18509950,18510318-185103...    26   7.1  
05_04_0142 - 18372751-18373338                                         26   7.1  

>01_07_0053 +
           40772966-40773080,40773484-40773578,40773730-40773843,
           40773984-40774088,40774179-40774250,40774293-40774346,
           40774507-40774619,40774705-40774839,40774941-40775009,
           40775140-40775227,40775327-40775398,40775476-40775576,
           40775836-40775953,40776054-40776113,40776206-40776316,
           40776499-40776573,40776821-40776854,40777453-40777805,
           40778154-40778222,40778526-40778762
          Length = 729

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 69  NATVSTLYLVIPEN*TSNLTPSILM*FIVKFYINLISFL 185
           N  ++ + LV+PE    +LTP   + FIV   I L++ +
Sbjct: 310 NIPMADMELVLPEKKNPSLTPMDWVQFIVSVVIGLVTLV 348


>11_05_0035 -
           18509505-18509615,18509840-18509950,18510318-18510377,
           18510459-18510576,18510711-18510811,18510891-18510962,
           18511069-18511156,18511423-18511557,18511655-18511767,
           18511980-18512051,18512154-18512258,18512371-18512484,
           18512587-18512681,18513539-18513686
          Length = 480

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +3

Query: 45  GVVLVRVLNATVSTLYLVIPEN*TSNLTPSILM*FIVKFYINLISFL 185
           G+ +    N  ++ + LV+PE    +LTP   + F++   + L++ +
Sbjct: 272 GIFVKHFKNIPMADMELVLPEKKNPSLTPMDWVKFLISAVLGLVTLI 318


>05_04_0142 - 18372751-18373338
          Length = 195

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 5   NSARGRPRDPGAVWCCARPSSE 70
           ++A    R P A WCC  P  E
Sbjct: 127 DNAGAAARAPAAAWCCVCPDEE 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,781,229
Number of Sequences: 37544
Number of extensions: 106807
Number of successful extensions: 209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)