Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32016
         (314 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51510.1 68414.m05797 RNA-binding protein, putative similar t...    26   6.1  
At3g19340.1 68416.m02454 expressed protein                             25   8.1  

>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
           RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
           from [Homo sapiens], RNA-binding protein Y14 [Xenopus
           laevis] GI:11034807; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 202

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 132 MALD*MFSSQVSLGTTY*RLRSELGRAQHHTAPGSR 25
           +++D  FSS  S G +Y R  S  GR+Q   +P  R
Sbjct: 166 VSVDWAFSSGPSGGESYRRKNSRYGRSQRSRSPRRR 201


>At3g19340.1 68416.m02454 expressed protein
          Length = 487

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +3

Query: 45  GVVLVRVLNATVSTLYLVIPEN*TSNLTPSILM*FIVKFYINLISFL 185
           G+ +    N  ++ + +V+PE     LTP   + F++   + L++ L
Sbjct: 279 GIYVKHFKNIPMADMEIVLPEKRNPGLTPMDWVKFLISAVVGLVAVL 325


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,805,607
Number of Sequences: 28952
Number of extensions: 80945
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)