Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32010
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    23   1.2  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    23   1.6  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 84  VYKPGRYVADPGRYDPSR---DNSGRYIP 161
           +++  +Y  DP ++DP R   +N  + +P
Sbjct: 383 IHRDPQYFPDPEKFDPERFSDENKAKIVP 411


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 72  VSPFVYKPGRYVADPGRYDPSR 137
           +S   Y P  Y  DP +YDP R
Sbjct: 393 ISGLHYDP-EYYPDPEKYDPER 413



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 66  STVSPFVYKPGRYVADPGRYDP 131
           S V  FV+ P      P R+DP
Sbjct: 453 SVVKDFVFDPTERTPVPLRFDP 474


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,878
Number of Sequences: 336
Number of extensions: 1732
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)