SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32009
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to vil...   173   8e-44
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil...   169   1e-42
At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V...   166   9e-42
At4g30160.1 68417.m04289 villin, putative similar to  villin 2 (...   162   1e-40
At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to vil...   100   7e-22
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes...    29   1.9  
At2g33420.1 68415.m04096 expressed protein                             29   2.5  
At5g45610.1 68418.m05605 expressed protein                             28   3.2  
At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family ...    28   3.2  
At5g10520.1 68418.m01218 protein kinase family protein contains ...    28   4.3  
At5g29613.1 68418.m03639 hypothetical protein                          27   5.7  
At3g23270.1 68416.m02933 regulator of chromosome condensation (R...    27   5.7  
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea...    27   7.5  
At1g13770.1 68414.m01616 expressed protein contains Pfam domain,...    27   7.5  
At3g53320.1 68416.m05883 expressed protein                             27   9.9  
At3g02750.1 68416.m00267 protein phosphatase 2C family protein /...    27   9.9  

>At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to villin
           2 (VLN2) [Arabidopsis thaliana] GI:3415115
          Length = 976

 Score =  173 bits (420), Expect = 8e-44
 Identities = 92/160 (57%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
 Frame = +1

Query: 40  AFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDK-DRLTWDIHFWLG 216
           AF  AG+KPG EIWRIENFE V VPK++ G FY GD+YIVL TT +K     +DIHFW+G
Sbjct: 9   AFQGAGQKPGTEIWRIENFEAVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLFDIHFWIG 68

Query: 217 SRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGF 396
             TSQDEAG AA+ TV L D    G AVQHRE+Q +ES +FL YF P I  L+GG ASGF
Sbjct: 69  KDTSQDEAGTAAVKTVEL-DAVLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGVASGF 127

Query: 397 SHVTINEGTEKRLFQIKGKRNVRVKQVKPTFESLNNGDCF 516
             V   E  E RL+  KGKR +R+KQV     SLN+ D F
Sbjct: 128 KTVE-EEVFETRLYTCKGKRAIRLKQVPFARSSLNHDDVF 166



 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
 Frame = +1

Query: 70  LEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDKDRL-TWDIHFWLGSRTSQDEAGA 246
           LE+W +       +PK   G  YSGD Y+VL T    +R   + +  W G ++  ++   
Sbjct: 392 LEVWYVNGKVKTPLPKEDIGKLYSGDCYLVLYTYHSGERKDEYFLSCWFGKKSIPEDQD- 450

Query: 247 AAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGF-SHVTINEGT 423
            AI   N      +G  VQ R  +  E  +F+  F P +  LKGG +SG+ S +  +E T
Sbjct: 451 TAIRLANTMSNSLKGRPVQGRIYEGKEPPQFVALFQPMV-VLKGGLSSGYKSSMGESEST 509

Query: 424 EK-------RLFQIKGK--RNVRVKQVKPTFESLNNGDCF 516
           ++        L Q+ G    N +  QV+    SLN+ +CF
Sbjct: 510 DETYTPESIALVQVSGTGVHNNKAVQVETVATSLNSYECF 549


>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
           3 (VLN3) [Arabidopsis thaliana] GI:3415117
          Length = 965

 Score =  169 bits (411), Expect = 1e-42
 Identities = 90/160 (56%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
 Frame = +1

Query: 40  AFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDK-DRLTWDIHFWLG 216
           AF   G+KPG EIWRIENFEPV VPK++ G FY GD+YIVL TT +K     +DIHFW+G
Sbjct: 11  AFQGVGQKPGTEIWRIENFEPVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLFDIHFWIG 70

Query: 217 SRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGF 396
             TSQDEAG AA+ TV L D    G AVQ+RE+Q +ES +FL YF P I  L+GG ASGF
Sbjct: 71  KDTSQDEAGTAAVKTVEL-DAALGGRAVQYREIQGHESDKFLSYFKPCIIPLEGGVASGF 129

Query: 397 SHVTINEGTEKRLFQIKGKRNVRVKQVKPTFESLNNGDCF 516
                 E  E RL+  KGKR V +KQV     SLN+ D F
Sbjct: 130 KKPE-EEEFETRLYTCKGKRAVHLKQVPFARSSLNHDDVF 168



 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 11/160 (6%)
 Frame = +1

Query: 70  LEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDKDRL-TWDIHFWLGSRTSQDEAGA 246
           LE+W I+      + K   G  YSGD Y+VL T    +R   + +  W G  ++Q++   
Sbjct: 394 LEVWYIDANSKTVLSKDHVGKLYSGDCYLVLYTYHSGERKEDYFLCCWFGKNSNQEDQET 453

Query: 247 AAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGFSHVTINEGTE 426
           A  L   + +   +G  VQ R  +  E  +F+  F   +  LKGG +SG+ +    +G+ 
Sbjct: 454 AVRLASTMTN-SLKGRPVQARIFEGKEPPQFVALFQHMV-VLKGGLSSGYKNSMTEKGSS 511

Query: 427 KR--------LFQIKGK--RNVRVKQVKPTFESLNNGDCF 516
                     L Q+ G    N +  QV+    SLN+ DCF
Sbjct: 512 GETYTPESIALIQVSGTGVHNNKALQVEAVATSLNSYDCF 551


>At5g57320.1 68418.m07160 villin, putative similar to villin 2
           (VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
           (VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
           profiles PF00626: Gelsolin repeat, PF02209: Villin
           headpiece domain
          Length = 962

 Score =  166 bits (403), Expect = 9e-42
 Identities = 87/166 (52%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
 Frame = +1

Query: 22  MPEVHQAFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDKD-RLTWD 198
           M ++ QA   AG+K G+EIWRIENF+PV VP+   G F++GDSYIVL TT  +   L  D
Sbjct: 5   MRDLDQALQGAGQKSGIEIWRIENFKPVTVPQESHGKFFTGDSYIVLKTTASRSGSLHHD 64

Query: 199 IHFWLGSRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKG 378
           IH+WLG  +SQDEAGA A++TV L D    G AVQ+REVQ +E+++FL YF P I   +G
Sbjct: 65  IHYWLGKDSSQDEAGAVAVMTVEL-DSALGGRAVQYREVQGHETEKFLSYFKPCIIPQEG 123

Query: 379 GHASGFSHVTINEGTEKRLFQIKGKRNVRVKQVKPTFESLNNGDCF 516
           G ASGF+HV   E  + RL+  KGK  VRVK+V     +LN+ D F
Sbjct: 124 GVASGFNHVKPEE-HQTRLYICKGKHVVRVKEVPFVRSTLNHEDVF 168



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 10/159 (6%)
 Frame = +1

Query: 70  LEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDKDRLTWDIHFWLGSRTSQDEAGAA 249
           L++WRI   E + +   +   FYSGD YI+  +   +DR    +  W G + S +E  A+
Sbjct: 396 LQVWRINCEEKILLEAAEQSKFYSGDCYILQYSYPGEDREEHLVGTWFG-KQSVEEDRAS 454

Query: 250 AILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGFSHV-------- 405
           AI   N   E  +    Q R  +  E  +F       I + KGG +  F           
Sbjct: 455 AISLANKMVESMKFVPAQARINEGKEPIQFFVIMQSFITF-KGGVSDAFKKYIAENDIPD 513

Query: 406 TINEGTEKRLFQIKGK--RNVRVKQVKPTFESLNNGDCF 516
           T  E     LF+++G    N++  Q++     LN+  C+
Sbjct: 514 TTYEAEGVALFRVQGSGPENMQAIQIEAASAGLNSSHCY 552


>At4g30160.1 68417.m04289 villin, putative similar to  villin 2
           (VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
           (VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
           profiles PF00626: Gelsolin repeat, PF02209: Villin
           headpiece domain
          Length = 974

 Score =  162 bits (394), Expect = 1e-40
 Identities = 87/166 (52%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
 Frame = +1

Query: 22  MPEVHQAFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDK-DRLTWD 198
           M ++  AF  AG+K G+EIWRIENF P  +PK+  G F++GDSYIVL TT  K   L  D
Sbjct: 5   MRDLDPAFQGAGQKAGIEIWRIENFIPTPIPKSSIGKFFTGDSYIVLKTTALKTGALRHD 64

Query: 199 IHFWLGSRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKG 378
           IH+WLG  TSQDEAG AA+ TV L D    G AVQ+REVQ +E+++FL YF P I   +G
Sbjct: 65  IHYWLGKDTSQDEAGTAAVKTVEL-DAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEG 123

Query: 379 GHASGFSHVTINEGTEKRLFQIKGKRNVRVKQVKPTFESLNNGDCF 516
           G ASGF HV   E    RLF  +GK  V VK+V     SLN+ D +
Sbjct: 124 GVASGFKHVVAEEHI-TRLFVCRGKHVVHVKEVPFARSSLNHDDIY 168



 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
 Frame = +1

Query: 28  EVHQAFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDKDRLTWDIHF 207
           E  Q F D      L++WR+       +       FYSGD Y+   +   +++    I  
Sbjct: 382 EEPQVFIDC--TGNLQVWRVNGQAKTLLQAADHSKFYSGDCYVFQYSYPGEEKEEVLIGT 439

Query: 208 WLGSRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYF--SPAIRYLKGG 381
           W G ++ ++E G+A    V++  +  +       + + YE KE +++F    +    KGG
Sbjct: 440 WFGKQSVEEERGSA----VSMASKMVESMKFVPAQARIYEGKEPIQFFVIMQSFIVFKGG 495

Query: 382 HASGF----SHVTINEGTEKR----LFQIKGK--RNVRVKQVKPTFESLNN 504
            +SG+    +   +++ T       LF+I+G    N++  QV P   SLN+
Sbjct: 496 ISSGYKKYIAEKEVDDDTYNENGVALFRIQGSGPENMQAIQVDPVAASLNS 546


>At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to villin
           1 (VLN1) [Arabidopsis thaliana] GI:3415113
          Length = 909

 Score =  100 bits (239), Expect = 7e-22
 Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 1/164 (0%)
 Frame = +1

Query: 28  EVHQAFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDK-DRLTWDIH 204
           ++  AF   G K GLEIW + N + +++PK+ FG F+SG++Y+VL T   K +   +DIH
Sbjct: 7   DIDSAFQGVGTKSGLEIWCVYNKQLISIPKSSFGKFHSGNAYLVLRTFLRKIESPQYDIH 66

Query: 205 FWLGSRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGH 384
           +WLG   ++ ++  A+   ++L D       VQ+REVQ  E+++FL YF P I  ++G +
Sbjct: 67  YWLGIDANEVDSILASDKALDL-DAALGCCTVQYREVQGQETEKFLSYFKPCIIPVEGKY 125

Query: 385 ASGFSHVTINEGTEKRLFQIKGKRNVRVKQVKPTFESLNNGDCF 516
           +         E  +  L + KG   VRVK+V     SLN+ D F
Sbjct: 126 SPKTG--IAGETYQVTLLRCKGDHVVRVKEVPFLRSSLNHDDVF 167



 Score = 32.7 bits (71), Expect = 0.15
 Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 10/158 (6%)
 Frame = +1

Query: 61  KPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDKDRLTWDIHFWLGSRTSQDEA 240
           +  L++WR++  +   +        ++GD Y+V      K+R    ++ W+G  + Q + 
Sbjct: 388 RDNLKVWRVDGDDVSLLSIPDQTKLFTGDCYLVQYKYTYKERTEHLLYVWIGCESIQQDR 447

Query: 241 GAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGFSHVTINE- 417
            A AI   +      +G +V     Q  E   F   F   + + KGG +  +  +   + 
Sbjct: 448 -ADAITNASAIVGTTKGESVLCHIYQGNEPSRFFPMFQSLVVF-KGGLSRRYKVLLAEKE 505

Query: 418 --GTE-----KRLFQIKG--KRNVRVKQVKPTFESLNN 504
             G E       LF++ G   RN++  QV     SLN+
Sbjct: 506 KIGEEYNENKASLFRVVGTSPRNMQAIQVNLVATSLNS 543


>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
           from this gene
          Length = 1035

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 25/86 (29%), Positives = 38/86 (44%)
 Frame = +2

Query: 62  SRVSKYGGLRTSNRSPFRRLSSVSSTPGTPTLY*TPQAIRTV*HGTSISGSARGPARTKP 241
           SRV +  GL+   RSP RR+S+V +  G  +   +P    ++  G+       G     P
Sbjct: 107 SRVKRALGLKMLKRSPSRRMSTVGTVVGAVSAPSSPGNNGSIGSGSGHFSPGAGFFTVPP 166

Query: 242 ARRPSSR*TWTTNNSRDQRYSTERSN 319
           AR    R   +    R Q   TE+S+
Sbjct: 167 AR--PRRPLTSAEIMRQQMKVTEQSD 190


>At2g33420.1 68415.m04096 expressed protein
          Length = 1039

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 62  SRVSKYGGLRTSNRSPFRRLSSVSSTPGTPT 154
           SRV +  GL+   RSP RR+S++ +  G  T
Sbjct: 113 SRVKRALGLKMLKRSPSRRMSTIGAAGGAAT 143


>At5g45610.1 68418.m05605 expressed protein
          Length = 633

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 138 VEETELSLRNGDRFEVLNPPYFETRLPA 55
           ++  E +L+  D +  L PPY  T LPA
Sbjct: 16  IDSIETTLKKADMYRPLPPPYLPTFLPA 43


>At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family
           protein / PEP carboxylase family protein similar to
           SP|P51059 Phosphoenolpyruvate carboxylase 2 (EC
           4.1.1.31) (PEPCASE) {Zea mays}; contains Pfam profile
           PF00311: phosphoenolpyruvate carboxylase
          Length = 1032

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 277 EQFQGSAVQHREVQYYESKEFLEYFSPA 360
           E+  G + QH     YE+ EFL YF  A
Sbjct: 812 EEISGISCQHYRSTVYENPEFLSYFHEA 839


>At5g10520.1 68418.m01218 protein kinase family protein contains
           protein kinase domain, INTERPRO:IPR000719
          Length = 467

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 307 REVQYYESKEFLEYFSPAIRYLKGGHASGFSHVTINEGT 423
           R   Y E     +YF+P     KGGHA  +  V IN  T
Sbjct: 139 RNFTYEELAVATDYFNPENMIGKGGHAEVYKGVLINGET 177


>At5g29613.1 68418.m03639 hypothetical protein
          Length = 117

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 268 LDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGFSHVTINEGTEKRLFQIK 447
           LD  Q Q     H   + ++ + F E F       +   A+G + + + +GT+ R  +I 
Sbjct: 21  LDGIQTQNGLQHHMSYKKFKDETF-EEFDDLKMVFEDNIATGGNAIGLGDGTDARTCEIA 79

Query: 448 GKR 456
           GK+
Sbjct: 80  GKK 82


>At3g23270.1 68416.m02933 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1); similar to
           zinc finger protein (GI:15811367) [Arabidopsis
           thaliana]; similar to chromosome condensation regulator
           protein (GI:22770461) [Cicer arietinum]
          Length = 1045

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 104 TGSKFSILHISRPGFLPASANA 39
           + +K S++  SRPGF P S+NA
Sbjct: 701 SANKNSVMSSSRPGFTPESSNA 722


>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 9
           (SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
           domain, G-beta repeat (4 copies)
          Length = 1677

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 113 GTATGSKFSILHISRPGFLPASANAW-CTSGIL 18
           G A GSKFS+   S+   +P   N+W C   I+
Sbjct: 457 GCAAGSKFSVTDYSKDENVPKFKNSWFCHDNIV 489


>At1g13770.1 68414.m01616 expressed protein contains Pfam domain,
           PF04884: Protein of unknown function, DUF647; contains
           non-consensus (GC) splice site at intron 2
          Length = 440

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 299 TADPWNCSSSKFTVRMAAAPASSWLVLEPSQKWMSHV-RRSLSPVV 165
           T + WN SSS    + A   ASS L ++ S    +HV RR L   V
Sbjct: 13  TLEEWNGSSSTKLFKTATITASSSLSIQRSANRFNHVWRRVLQAFV 58


>At3g53320.1 68416.m05883 expressed protein
          Length = 553

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +2

Query: 191 HGTSISGSARGPARTKPARRPSSR*TWTTNNSRDQRYSTERSNITSPR 334
           HG+S S S +   +T+PAR P      +TN+    + S++  +++SP+
Sbjct: 494 HGSSSSASKKSGGKTQPARSPIQE---STNSK--SKASSKVVSVSSPK 536


>At3g02750.1 68416.m00267 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2C;
           PP2C (GI:3643088) [Mesembryanthemum crystallinum];
           contains Pfam PF00481 : Protein phosphatase 2C domain;
          Length = 492

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
 Frame = +1

Query: 25  PEVHQAFADAGRKPGLEIWR------IENFEPVAVPKTQFGLFYSGDSYIVLNTTGDKDR 186
           PEV + +      PGL + R      +++F  ++VP   F      D +IVL T G  D 
Sbjct: 284 PEVCRVWLPNCDSPGLAMARAFGDFCLKDFGLISVPDVSFRQLTEKDEFIVLATDGIWDV 343

Query: 187 LT-WDIHFWLGSRTSQDEAGAAAI 255
           L+  D+   + S  S+  A  A +
Sbjct: 344 LSNEDVVAIVASAPSRSSAARALV 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,612,302
Number of Sequences: 28952
Number of extensions: 240072
Number of successful extensions: 763
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -