Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32004
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02640.2 68417.m00359 bZIP transcription factor family protei... 34 0.065
At4g02640.1 68417.m00358 bZIP transcription factor family protei... 34 0.065
At5g03660.1 68418.m00325 expressed protein low similarity to out... 30 1.1
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 29 1.4
At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibit... 29 1.4
At5g57970.1 68418.m07253 methyladenine glycosylase family protei... 28 3.2
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea... 28 3.2
At5g57830.1 68418.m07232 expressed protein contains Pfam profile... 28 4.3
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 28 4.3
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ... 28 4.3
At3g07790.1 68416.m00951 DGCR14-related similar to DGCR14 protei... 27 7.5
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 27 9.9
>At4g02640.2 68417.m00359 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 417
Score = 33.9 bits (74), Expect = 0.065
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = +2
Query: 299 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKP 478
+++D+ NE T +D ++ R+ + +RK + SDL +QVNDL+G+
Sbjct: 205 EDLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEH-SS 262
Query: 479 TLKKVSKYENKF 514
LK++S +K+
Sbjct: 263 LLKQLSNMNHKY 274
>At4g02640.1 68417.m00358 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 411
Score = 33.9 bits (74), Expect = 0.065
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = +2
Query: 299 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKP 478
+++D+ NE T +D ++ R+ + +RK + SDL +QVNDL+G+
Sbjct: 199 EDLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEH-SS 256
Query: 479 TLKKVSKYENKF 514
LK++S +K+
Sbjct: 257 LLKQLSNMNHKY 268
>At5g03660.1 68418.m00325 expressed protein low similarity to outer
surface protein F [Borrelia burgdorferi] GI:466482;
contains Pfam profile PF04949: Family of unknown
function (DUF662)
Length = 173
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +2
Query: 44 DDEKSVSRX-AKKAKQAEIDRKRAEVRKRME 133
DDE S+ A KAK+ EI++K+ E+R+R++
Sbjct: 36 DDELSMKALSAFKAKEEEIEKKKMEIRERVQ 66
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/39 (28%), Positives = 27/39 (69%)
Frame = +2
Query: 356 ERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFV 472
+++A L+ ++ +LE +++K EIS+ SQ+ +L+ + +
Sbjct: 879 QQVASLDSQRAELEIQLEKKSEEISEYLSQITNLKEEII 917
>At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibitor
family protein low similarity to SP|P83326
Pectinesterase inhibitor (Pectin methylesterase
inhibitor) (PMEI) {Actinidia chinensis}, pistil-specific
gene sts15 [Solanum tuberosum] GI:1616628; contains Pfam
profile PF04043: Plant invertase/pectin methylesterase
inhibitor
Length = 145
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 293 KPKNIDDANEDTIKRVCKDYHERIARLED 379
K KN++ A EDT+ K+Y + +A+L+D
Sbjct: 53 KQKNLEPALEDTLDDCSKNYLDAVAQLDD 81
>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 347
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +3
Query: 246 NVKLLKGGASSRRGAVNLRTLTTPTKILLRGFAKTTMNASLVLKMKNSIWNTSL 407
+++ L+ +S R G+ + TPT+ + K T+NA+ +L+ N++L
Sbjct: 40 SLRKLERSSSGRTGSDEKTSYATPTETVSSSSQKHTLNAASILRRHEQNLNSNL 93
>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to LACK protective antigen (GI:13625467)
[Leishmania donovani]
Length = 804
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 303 TLTTPTKILLRGFAKTTMNASLVLKMKNSIWNTSLKGKIW 422
TLT TK+ G ++ + AS + + + S+WNTS W
Sbjct: 577 TLTPITKLCFAGKSEFLVAASHIPRPELSVWNTSKLSLSW 616
>At5g57830.1 68418.m07232 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 387
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 356 ERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYENKF 514
E++ E E ++ +K+MEI+ L QV R K + + ENKF
Sbjct: 78 EKMCHAETSLVLFEDLIYQKEMEIASLEFQVQAYRCKLLSLGCSDPAVIENKF 130
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 362 IARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 481
++ L K L ++++KD EIS+ NS + K VK T
Sbjct: 117 MSELHKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLT 156
>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
contains tubulin-tyrosine ligase family domain,
Pfam:PF03133
Length = 867
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 323 DTIKRVCKDYHERIARLEDEKFDLEYIV 406
+T ++C+ Y E A + KFDL Y+V
Sbjct: 674 ETGPKICQKYIEHPALFKGNKFDLRYVV 701
>At3g07790.1 68416.m00951 DGCR14-related similar to DGCR14 protein
(DiGeorge syndrome critical region 14) (ES2 protein)
(Swiss-Prot:Q96DF8) [Homo sapiens]
Length = 508
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 308 DDANEDTIKRVC-KDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGK 466
+DA + I+++ +DY I +L D ++ + R ++I D ++ + RGK
Sbjct: 50 EDAYVEAIEKIIERDYFPDITKLRDRLDWIQAVKTRDPIQIRDAQLKIIERRGK 103
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +2
Query: 293 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLN 439
+P + + + +K +C+DY + + K + E KR+ + DL+
Sbjct: 448 RPDGVHTLDREMVKMICRDYDVEVLDADSVKVE-EMAKKRQTFDEEDLD 495
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,690,837
Number of Sequences: 28952
Number of extensions: 113523
Number of successful extensions: 471
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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