Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32003
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr...    32   0.28 
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p...    32   0.28 
Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z75552-4|CAA99942.1|  624|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    27   8.0  

>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
            H05L14.2 protein.
          Length = 2162

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +2

Query: 236  DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRT 415
            D   A + +S +  P+  P+ + +      Y    +++P    PLP P ++A  +++   
Sbjct: 946  DEQPASESTSAFDIPEHPPVIVPFRNAPIVYSSQTSNIPQIHPPLPPPRFLAMPMQF-SG 1004

Query: 416  HPPKPEVGQRI 448
            HPP   +G  I
Sbjct: 1005 HPPPVIMGPPI 1015


>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
            protein H05L14.2 protein.
          Length = 2162

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +2

Query: 236  DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRT 415
            D   A + +S +  P+  P+ + +      Y    +++P    PLP P ++A  +++   
Sbjct: 946  DEQPASESTSAFDIPEHPPVIVPFRNAPIVYSSQTSNIPQIHPPLPPPRFLAMPMQF-SG 1004

Query: 416  HPPKPEVGQRI 448
            HPP   +G  I
Sbjct: 1005 HPPPVIMGPPI 1015


>Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical
           protein B0393.4 protein.
          Length = 803

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 329 QPSGAHLPTTPAPLPIPDYIARAIE-YIRTHPPKPEVGQR 445
           +PS    P+ P P P+P+ I   ++  +   P KP V +R
Sbjct: 47  EPSSPTRPSEPIPPPLPEPIPELVQILLAAEPNKPSVPKR 86


>Z75552-4|CAA99942.1|  624|Caenorhabditis elegans Hypothetical
           protein W04D2.4 protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 131 SQDADVFPDKYQYQYQTSNGISGQEQGALVNEGREDASI 247
           S  + VFP + +YQY+   G+   EQ  L + G  D ++
Sbjct: 558 SSSSTVFPTRSKYQYRPGKGLERAEQDYL-SRGNGDITL 595


>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 124 LGISFASAHDVRNVSDGYR--DQSEEDVSSHF 35
           LGI++  +H VRN++DG     QSE D +  F
Sbjct: 304 LGINYYLSHIVRNLNDGEEPASQSERDAAYAF 335


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 326 YQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKPEVGQ 442
           YQP+   +P  PAP   P Y   A   +  + P P   Q
Sbjct: 181 YQPTYCAVPPCPAPAATPVYAQPAPRPMPVYAPAPACAQ 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,231,722
Number of Sequences: 27780
Number of extensions: 236659
Number of successful extensions: 741
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)