Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32003
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 33 0.11
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 32 0.26
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 32 0.26
At3g61260.1 68416.m06856 DNA-binding family protein / remorin fa... 29 1.4
At3g25950.1 68416.m03234 hypothetical protein 29 2.5
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 28 3.2
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 28 3.2
At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 7.5
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 27 9.9
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 27 9.9
At2g26410.1 68415.m03169 calmodulin-binding family protein simil... 27 9.9
At2g20950.4 68415.m02474 expressed protein 27 9.9
At2g20950.3 68415.m02473 expressed protein 27 9.9
At2g20950.2 68415.m02472 expressed protein 27 9.9
At2g20950.1 68415.m02471 expressed protein 27 9.9
At1g20060.1 68414.m02511 kinesin motor protein-related 27 9.9
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 33.1 bits (72), Expect = 0.11
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 260 SSGY--TAPDGTPIQITYIADANGYQP-SGAHLPTTPAPLPI-PDYIARAIEYIRTHP 421
S GY T+P +P TY + GY P S A+ PT+P+ P P Y + Y T P
Sbjct: 1563 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1620
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 236 DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIA 391
D S + + +P P+ + + A G+ P GAH P P P P+P +A
Sbjct: 201 DHSCRLPNDARAPSPVNNPL-LGSLPKAEGFPPLGAHGPFQPTPSPVPTPLA 251
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 236 DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIA 391
D S + + +P P+ + + A G+ P GAH P P P P+P +A
Sbjct: 201 DHSCRLPNDARAPSPVNNPL-LGSLPKAEGFPPLGAHGPFQPTPSPVPTPLA 251
>At3g61260.1 68416.m06856 DNA-binding family protein / remorin
family protein similar to DNA-binding protein gi|601843
[Arabidopsis thaliana], remorin [Solanum tuberosum]
GI:1881585; contains Pfam profiles PF03763: Remorin
C-terminal region, PF03766: Remorin N-terminal region
Length = 212
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 287 TPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKPE 433
+P ++T A A+ P+ A +P PAP P P + + + + P PE
Sbjct: 13 SPAKVTTPAPADTPAPAPAEIPA-PAPAPTPADVTKDVAEEKIQNPPPE 60
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -1
Query: 429 GLGG*VLMYSMARAM*SGIGRGAGVVGRWAPEGW 328
GL G V++Y MA G G GVV RWA W
Sbjct: 187 GLAGPVVLYDMATFY--GSGAADGVVPRWAWLSW 218
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 308 IADANGYQPSGAHLPTTPAPLPIPDYIA 391
I A G+ P GAH P P P+P +A
Sbjct: 224 IPKAGGFPPLGAHGPFQPTASPVPTPLA 251
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 308 IADANGYQPSGAHLPTTPAPLPIPDYIA 391
I A G+ P GAH P P P+P +A
Sbjct: 224 IPKAGGFPPLGAHGPFQPTASPVPTPLA 251
>At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Gallus gallus [GI:212530], Rattus
norvegicus [GI:474940], Drosophila melanogaster
[GI:4336512]; contains PF03171 2OG-Fe(II) oxygenase
superfamily domain
Length = 288
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -3
Query: 151 ENVSILRHNLGISFASAHDVRNVSDGYRDQSEEDVSS 41
E+ +ILR+ LG + S +DV N ++ Y QS + ++S
Sbjct: 166 ESFNILRYELGQKYDSHYDVFNPTE-YGPQSSQRIAS 201
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 308 IADANGYQPSGAHLPTTPAPLPIPDYIA 391
+ G+ P GAH P P P P+ +A
Sbjct: 224 VPKVGGFPPLGAHGPFQPTPAPLTTSLA 251
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 308 IADANGYQPSGAHLPTTPAPLPIPDYIA 391
+ G+ P GAH P P P P+ +A
Sbjct: 224 VPKVGGFPPLGAHGPFQPTPAPLTTSLA 251
>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 516
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 332 PSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 430
PS H P P P P+PD+ + + + PP P
Sbjct: 46 PSSVHRPYPPPP-PLPDFAPQPLLPPPSPPPPP 77
>At2g20950.4 68415.m02474 expressed protein
Length = 530
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 145 RFPGQIPVPISDQQRNQWPGTRSARKRGP*GCIHRRPRFKRLHCP 279
R + PISD+Q W + A +R P H+RP R P
Sbjct: 49 RSESEYAFPISDEQTTHWKPQQQASERIPNS--HQRPPVYRYSTP 91
>At2g20950.3 68415.m02473 expressed protein
Length = 505
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 145 RFPGQIPVPISDQQRNQWPGTRSARKRGP*GCIHRRPRFKRLHCP 279
R + PISD+Q W + A +R P H+RP R P
Sbjct: 49 RSESEYAFPISDEQTTHWKPQQQASERIPNS--HQRPPVYRYSTP 91
>At2g20950.2 68415.m02472 expressed protein
Length = 503
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 145 RFPGQIPVPISDQQRNQWPGTRSARKRGP*GCIHRRPRFKRLHCP 279
R + PISD+Q W + A +R P H+RP R P
Sbjct: 49 RSESEYAFPISDEQTTHWKPQQQASERIPNS--HQRPPVYRYSTP 91
>At2g20950.1 68415.m02471 expressed protein
Length = 520
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 145 RFPGQIPVPISDQQRNQWPGTRSARKRGP*GCIHRRPRFKRLHCP 279
R + PISD+Q W + A +R P H+RP R P
Sbjct: 49 RSESEYAFPISDEQTTHWKPQQQASERIPNS--HQRPPVYRYSTP 91
>At1g20060.1 68414.m02511 kinesin motor protein-related
Length = 951
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 127 NLGISFASAHDVRNVSDGYRDQSEEDVSSHFECVCVNASC 8
N+GI H V+D RDQ+++D + E V V+ C
Sbjct: 755 NVGIPSTITHVEAEVTDFQRDQNQDDPTPSPEQVEVSQDC 794
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,732,792
Number of Sequences: 28952
Number of extensions: 222239
Number of successful extensions: 819
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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