Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32002
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    31   0.10 
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.7  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   2.9  
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    25   5.1  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   8.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.9  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 471  SSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLP-IPDYIARAIEYIRTHP 310
            S GYT+P  + +   Y   +  Y PS     T+PA +P  P Y   +  Y  T P
Sbjct: 1536 SPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590



 Score = 26.2 bits (55), Expect = 2.9
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -1

Query: 489  SIAVQGSSGYTAPDGTPIQITYIADANGYQPSG-AHLPTTPAPLPI-PDYIARAIEYIRT 316
            S A+    G T+P  +P    Y + +  Y PS  ++ PT+P+  P  P Y   +  Y  T
Sbjct: 1544 SSAMSPGYGLTSPSYSPSSPGY-STSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1602

Query: 315  HP 310
             P
Sbjct: 1603 SP 1604


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 241 CFNNSRPYQLSYNLNTLADLWLGWM 315
           CF+   P Q   NL + A+LW  WM
Sbjct: 372 CFDGYLPAQERSNLKSKAELWNEWM 396


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +1

Query: 1   FFFFFITHLLIYCLLSLTNKL-----YLPIFRSQFIIENSLPTLYVVF*LKKKTNKIPVF 165
           FFFF    + +  L SL++ L     +LP+    F   + LP L+ +   KK+   IP  
Sbjct: 157 FFFFLCVCVFLSFLFSLSHLLSLAILFLPLLLRVFSTLSRLPRLFCLCLQKKRRVLIPFA 216

Query: 166 LT 171
            T
Sbjct: 217 FT 218


>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +1

Query: 127 F*LKKKTNKIPVFLTLIKVYFTYCETRHINDRQCYGLRCFNNSRPYQLSYNL 282
           F LK +  ++ V  +  KV  T              L+CF+  +PYQ S  L
Sbjct: 158 FYLKNRLAELKVLRSSTKVVLTSSLVAEKKSLDFEDLQCFHGEQPYQSSKRL 209


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 480 VQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAP 364
           VQ  + YT+  G P   T +A A  +  +G ++    +P
Sbjct: 56  VQSPTSYTSMHGLPFSTTQMAAAPAHPTTGYNVSRVTSP 94


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +1

Query: 163 FLTLIKVYFTYCETRHINDR-QCYGLRCFNNS 255
           FLT    Y   C +R    + QCY  RC  NS
Sbjct: 397 FLTNGGCYSYICRSRSCPSKYQCYSCRCARNS 428


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = -1

Query: 495  DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRT 316
            D   +   S G+  P   P     + + + Y+P  ++L + PAP P P Y   +      
Sbjct: 826  DEMASPSSSIGHPLPSPPPADFNSL-NVDFYEPH-SYLES-PAPEPQPSYEEESFNATVI 882

Query: 315  HPPKP 301
            H P P
Sbjct: 883  HAPTP 887


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,739
Number of Sequences: 5004
Number of extensions: 39310
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)