Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32002
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)                31   0.74 
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               30   0.98 
SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)                    28   5.3  
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
          Length = 850

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 193 YCETRHINDRQCYGLRCFNNS 255
           +C+   +N R CYG+RC+N +
Sbjct: 438 HCDLAMMNGRTCYGVRCYNKT 458


>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 299

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
 Frame = -1

Query: 477 QGSSGYTAPDGTPIQITYIAD--ANGY-----QPSGAHL--PTTPAPLPIPDYIARAIEY 325
           Q S G+T     PIQ +Y A   + GY      P+ AH   P T  P+  P Y A    Y
Sbjct: 14  QHSQGFTTVQNPPIQTSYTAPQASTGYAVQGTAPTAAHYGPPQTQRPVVQPAYSAGTTAY 73

Query: 324 IRTHP 310
            ++ P
Sbjct: 74  AQSAP 78


>SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 793

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = -1

Query: 483 AVQGSSGYTAPDGTPIQITYIAD-----ANGYQPSGAHLPTTPA--PLPIPDYI 343
           +V GS G  +P GTP+    +A      A  ++ S A LP T A  P P P Y+
Sbjct: 508 SVTGSIGERSPVGTPVASPVVAPVMSPLAAAHRASSASLPVTTAVSPAPEPTYL 561


>SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)
          Length = 514

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -1

Query: 513 VNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIARA 334
           ++ G   A+   +G+   T P G P Q  Y        P G H  TTP   P  +Y  + 
Sbjct: 425 LHPGDTHATTTPRGTHATTTPRGVPTQQLY--------PGGTHATTTPRRYPRNNY-TQG 475

Query: 333 IEYIRTHP 310
           +   + HP
Sbjct: 476 VPTQQLHP 483



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 399 PSGAHLPTTPAPLPIPDYIARAIEYIRTHP 310
           P G H  TTP   P  DY    +   + HP
Sbjct: 483 PGGTHATTTPRRYPRNDYTQEGVPTQQLHP 512


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -1

Query: 462 YTAPDGTPIQITYIA--DANGYQPSGAHLPTTPAPLPIPD 349
           Y +P  T     Y A  D  GY PS   +P++P P P  D
Sbjct: 561 YISPTATAGDRRYPARPDPMGYSPSEMGVPSSPLPRPASD 600


>SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 417 QQCK*FEWEYHQGQCSRLNLGRRWMHPHG 503
           Q  +  EW   +G    LN G +W HP G
Sbjct: 473 QTVRSMEWRRTKGATPTLNTGPQWGHPKG 501


>SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 489 SIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAP 364
           S+ +QG + Y    G+ +    I  A G  P GA   TTP P
Sbjct: 53  SLVIQGVAKYKPGGGSMVLSLIIQGAPGLMPGGA--ATTPGP 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,683,249
Number of Sequences: 59808
Number of extensions: 281076
Number of successful extensions: 637
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)