Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32001
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 316 1e-87
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 157 1e-39
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 146 1e-36
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 121 6e-29
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 1e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 85 8e-18
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 79 3e-16
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 71 1e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.95
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.7
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 5.1
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 6.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 8.9
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 8.9
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.9
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 316 bits (776), Expect = 1e-87
Identities = 146/166 (87%), Positives = 156/166 (93%)
Frame = +2
Query: 2 RDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 181
RDIKEKLCYVALDFEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQPS LG+
Sbjct: 210 RDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGL 269
Query: 182 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI 361
E+ GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI
Sbjct: 270 ENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKI 329
Query: 362 IAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 499
+APPERKYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 330 VAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 157 bits (380), Expect = 1e-39
Identities = 72/166 (43%), Positives = 108/166 (65%)
Frame = +2
Query: 2 RDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 181
R+IKEK CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G
Sbjct: 215 REIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGS 274
Query: 182 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI 361
E+ G+H ++ SI+ D+D+R LY+N V+SGG+T+ G +R E+ A++ ++KI
Sbjct: 275 EASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKI 334
Query: 362 IAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 499
A PER ++ W+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 335 YASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 146 bits (355), Expect = 1e-36
Identities = 73/169 (43%), Positives = 111/169 (65%), Gaps = 12/169 (7%)
Frame = +2
Query: 2 RDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 181
R++KEKLCYV+ D E + + +T L ++Y LPDG+VI +G+ER+ CPE LFQP +G
Sbjct: 210 REMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGS 269
Query: 182 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL--------A 337
E G+ E ++++I DVDIRK LY V+SGG++MY G+ R++KEI L
Sbjct: 270 EQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGD 329
Query: 338 PSTI---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 472
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 330 PARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 121 bits (292), Expect = 6e-29
Identities = 65/148 (43%), Positives = 85/148 (57%), Gaps = 11/148 (7%)
Frame = +2
Query: 62 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC---------GIHETVYN 214
A AS+ K +E PDG G ERFR E LF PSF S G+HE VY
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 215 SIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKII-APPERKYS 388
SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S I + +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390
Query: 389 VWIGGSILASLSTFQQMWISKEEYDESG 472
VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 391 VWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 1e-20
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = +2
Query: 191 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 370
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 371 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 496
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 84.6 bits (200), Expect = 8e-18
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Frame = +2
Query: 5 DIKEKLCYVALDFEQEMATAAAS--TSLEKSYELPD------------------GQVITI 124
+IKE +CYV+ +F+++M + LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 125 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 304
NERF PE LF PS + + GI E V S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 305 DRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 484
R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G I+
Sbjct: 337 KRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIM 395
Query: 485 HRK 493
RK
Sbjct: 396 TRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 79.4 bits (187), Expect = 3e-16
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 19/180 (10%)
Frame = +2
Query: 8 IKEKLCYVALDFEQEMATAAASTS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 175
IKE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 176 GMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI- 349
+ + E V N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIH 359
Query: 350 -------------KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 490
+ +I+ ++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 360 RSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.9 bits (166), Expect = 1e-13
Identities = 32/115 (27%), Positives = 62/115 (53%)
Frame = +2
Query: 131 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 310
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 311 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 475
+++E+T++ P I + W G S + F+ +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +2
Query: 245 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 415
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 416 SLSTFQQMWISKEEYDESGPGIVHRK 493
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.95
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +2
Query: 392 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 493
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 317 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 427
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 196 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 324
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 343 DHQDQDHRSPREEVLRMDRWIHPG 414
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 8.9
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +2
Query: 113 VITIGNERFRCPEALFQPSFLGMESC-GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTM 289
++T+ NE + E L S S E+ + CD+D ++ + + T +
Sbjct: 136 LVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLAFTDDTNL 192
Query: 290 YPGIADRMQKEITALAPSTIKIKIIAPPERKYS 388
+P AD I ++K A RKYS
Sbjct: 193 FPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 384 YFLSGGAMILILMVEGARAVISFCILSAIPGY 289
Y +SGGA + +A +S CI +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 23 CYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNE-RFRCP 148
CYV+ +E + + SL SY +PD + I + R+ P
Sbjct: 39 CYVSRPLTKERSCSHPYISLGSSYGIPDAENIEYPRDARYHSP 81
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 8 IKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQV 115
IKEKL VA EQE A +SL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,610
Number of Sequences: 5004
Number of extensions: 34573
Number of successful extensions: 133
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -