Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31996
         (516 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20998-1|AAA70170.1|   86|Homo sapiens signal recognition partic...    84   2e-16
BC066957-1|AAH66957.1|   86|Homo sapiens signal recognition part...    84   2e-16
BC022415-1|AAH22415.1|   86|Homo sapiens signal recognition part...    84   2e-16
BC015094-1|AAH15094.1|   86|Homo sapiens signal recognition part...    84   2e-16
BC008443-1|AAH08443.1|   86|Homo sapiens signal recognition part...    84   2e-16
EF488978-1|ABP02070.1|   82|Homo sapiens signal recognition part...    54   4e-07
BC067845-1|AAH67845.1|   82|Homo sapiens SRP9 protein protein.         54   4e-07
BC021995-1|AAH21995.1|   82|Homo sapiens SRP9 protein protein.         54   4e-07
BC106005-1|AAI06006.1|   52|Homo sapiens SRP9 protein protein.         52   1e-06
BC064351-1|AAH64351.1|   49|Homo sapiens SRP9 protein protein.         52   1e-06
BC017414-1|AAH17414.1|   45|Homo sapiens Similar to signal recog...    42   0.001
X57398-1|CAA40655.1| 1190|Homo sapiens pm5 protein protein.            29   9.7  
U91318-4|AAC15783.1| 1148|Homo sapiens pM5 (3' partial) protein.       29   9.7  
BC065535-1|AAH65535.1| 1222|Homo sapiens NODAL modulator 1 protein.    29   9.7  
BC041131-1|AAH41131.1| 1222|Homo sapiens NODAL modulator 2 protein.    29   9.7  
BC028389-1|AAH28389.1| 1100|Homo sapiens NOMO2 protein protein.        29   9.7  

>U20998-1|AAA70170.1|   86|Homo sapiens signal recognition particle
           subunit 9 protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 2e-16
 Identities = 38/71 (53%), Positives = 49/71 (69%)
 Frame = +3

Query: 228 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 407
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 408 SNLLRHMASND 440
           S L+R M + +
Sbjct: 67  SQLMRLMVAKE 77


>BC066957-1|AAH66957.1|   86|Homo sapiens signal recognition
           particle 9kDa protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 2e-16
 Identities = 38/71 (53%), Positives = 49/71 (69%)
 Frame = +3

Query: 228 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 407
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 408 SNLLRHMASND 440
           S L+R M + +
Sbjct: 67  SQLMRLMVAKE 77


>BC022415-1|AAH22415.1|   86|Homo sapiens signal recognition
           particle 9kDa protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 2e-16
 Identities = 38/71 (53%), Positives = 49/71 (69%)
 Frame = +3

Query: 228 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 407
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 408 SNLLRHMASND 440
           S L+R M + +
Sbjct: 67  SQLMRLMVAKE 77


>BC015094-1|AAH15094.1|   86|Homo sapiens signal recognition
           particle 9kDa protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 2e-16
 Identities = 38/71 (53%), Positives = 49/71 (69%)
 Frame = +3

Query: 228 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 407
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 408 SNLLRHMASND 440
           S L+R M + +
Sbjct: 67  SQLMRLMVAKE 77


>BC008443-1|AAH08443.1|   86|Homo sapiens signal recognition
           particle 9kDa protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 2e-16
 Identities = 38/71 (53%), Positives = 49/71 (69%)
 Frame = +3

Query: 228 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 407
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 408 SNLLRHMASND 440
           S L+R M + +
Sbjct: 67  SQLMRLMVAKE 77


>EF488978-1|ABP02070.1|   82|Homo sapiens signal recognition
           particle 9 kDa isoform protein.
          Length = 82

 Score = 53.6 bits (123), Expect = 4e-07
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +3

Query: 228 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 377
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  ++CL     +Q
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58


>BC067845-1|AAH67845.1|   82|Homo sapiens SRP9 protein protein.
          Length = 82

 Score = 53.6 bits (123), Expect = 4e-07
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +3

Query: 228 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 377
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  ++CL     +Q
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58


>BC021995-1|AAH21995.1|   82|Homo sapiens SRP9 protein protein.
          Length = 82

 Score = 53.6 bits (123), Expect = 4e-07
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +3

Query: 228 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 377
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  ++CL     +Q
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58


>BC106005-1|AAI06006.1|   52|Homo sapiens SRP9 protein protein.
          Length = 52

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 22/39 (56%), Positives = 27/39 (69%)
 Frame = +3

Query: 228 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN 344
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDD 45


>BC064351-1|AAH64351.1|   49|Homo sapiens SRP9 protein protein.
          Length = 49

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 22/39 (56%), Positives = 27/39 (69%)
 Frame = +3

Query: 228 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN 344
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDD 45


>BC017414-1|AAH17414.1|   45|Homo sapiens Similar to signal
           recognition particle 9kD protein.
          Length = 45

 Score = 42.3 bits (95), Expect = 0.001
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = +3

Query: 333 ITDNKKCLQYKTEVQQDVRKIDKFMSNLLRHMASND 440
           +TD+  CL YKT+  QDV+KI+KF S L+R M + +
Sbjct: 1   VTDDLVCLVYKTDQAQDVKKIEKFHSQLMRLMVAKE 36


>X57398-1|CAA40655.1| 1190|Homo sapiens pm5 protein protein.
          Length = 1190

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 265 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 369
           +R++ I      IH QK HL  + +TIK A NT Q
Sbjct: 333 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 367


>U91318-4|AAC15783.1| 1148|Homo sapiens pM5 (3' partial) protein.
          Length = 1148

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 265 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 369
           +R++ I      IH QK HL  + +TIK A NT Q
Sbjct: 365 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 399


>BC065535-1|AAH65535.1| 1222|Homo sapiens NODAL modulator 1 protein.
          Length = 1222

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 265 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 369
           +R++ I      IH QK HL  + +TIK A NT Q
Sbjct: 365 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 399


>BC041131-1|AAH41131.1| 1222|Homo sapiens NODAL modulator 2 protein.
          Length = 1222

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 265 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 369
           +R++ I      IH QK HL  + +TIK A NT Q
Sbjct: 365 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 399


>BC028389-1|AAH28389.1| 1100|Homo sapiens NOMO2 protein protein.
          Length = 1100

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 265 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 369
           +R++ I      IH QK HL  + +TIK A NT Q
Sbjct: 198 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 232


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,243,532
Number of Sequences: 237096
Number of extensions: 1235716
Number of successful extensions: 1777
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1777
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)