Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31996
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   10.0 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   10.0 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   10.0 

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 271 SCRYNISAAFSNSSQFGTKVITANY 197
           S RY ++ AF  S  FGT  I +++
Sbjct: 323 SKRYKMAVAFMLSHPFGTPRIMSSF 347


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -2

Query: 131 YTHGAHTNYRLDIRLNYNQGILIMYLCMYSFYL 33
           Y +  + NY  +   NYN      Y  +Y  Y+
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYI 121


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -2

Query: 131 YTHGAHTNYRLDIRLNYNQGILIMYLCMYSFYL 33
           Y +  + NY  +   NYN      Y  +Y  Y+
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYI 121


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 346 LLSVILTLNAPFECEYLT 293
           LLSV L  NA F CE  T
Sbjct: 339 LLSVHLGGNAEFRCEVST 356


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 346 LLSVILTLNAPFECEYLT 293
           LLSV L  NA F CE  T
Sbjct: 339 LLSVHLGGNAEFRCEVST 356


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 71  ILIMYLCMYSFYL 33
           +LI +LC+  FYL
Sbjct: 245 VLISFLCVLVFYL 257


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 285 RYSVKYSHSKGAFNVKITDNKKCLQYKTE 371
           R+  +Y   +  F  + TD++   +YK E
Sbjct: 154 RHHPRYKRPRTTFEPRATDSRHYDRYKEE 182


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 377 LYFCFVLKALFIVSNFDIKCT 315
           LY   +LK   I+ + D++CT
Sbjct: 11  LYAIKILKKDIIIQDDDVECT 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,278
Number of Sequences: 438
Number of extensions: 2676
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)