Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31988
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)             28   5.3  
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       27   9.2  

>SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)
          Length = 816

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 255 RTCSLSGLRTASQNH-HPSSSWTHPSLPS 172
           +T  LS L T S  H HP+  W+ P LPS
Sbjct: 319 QTSWLSILATESNKHFHPTDPWSGPYLPS 347


>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
 Frame = -3

Query: 337  TITRTSNANSSPMIVAVTVTTQAFIRRSHLFIVGPP---------YCLSKSP-PIKFLDA 188
            T T  +   ++ +I+ + +TT   +  S + I+  P         + L K+   IK+ D 
Sbjct: 1715 TTTIITTIINATIIIIIIITTTVIVDISTIIIIIAPSTRGLIIIFFQLDKAYYSIKYGDR 1774

Query: 187  SFTSFMVSF-CV-YIVIGSGMSACFSAITVLTLHPRTVDVTVIDYDRYSLSGHH 32
               S++    CV +IVIG  + ACF++     L  R +D  V+ Y      G H
Sbjct: 1775 IPRSYIGRLICVLWIVIGVILIACFNSTMTTILTARILDKDVMLYGTKVTHGSH 1828


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,988,154
Number of Sequences: 59808
Number of extensions: 339102
Number of successful extensions: 1004
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)