Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31983
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49540.1 68414.m05553 transducin family protein / WD-40 repea...    31   0.61 
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea...    29   2.5  
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p...    28   3.2  
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p...    28   3.2  
At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s...    27   9.9  
At3g20940.1 68416.m02647 cytochrome P450 family protein similar ...    27   9.9  

>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
           family protein similar to signal transducer and
           activator of transcription interacting protein 1
           (GI:15929722) {Mus musculus}; similar to hypothetical
           protein GB:AAD43147 GI:5430747 from (Arabidopsis
           thaliana); contains Pfam PF00400: WD domain, G-beta
           repeat (11 copies, 2 weak)
          Length = 840

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +1

Query: 340 VRSIGQGTVSGITDVAWIRISVIVVAVTRVDLLRSCQSYNEDGEQNEQFREHFEQFSK 513
           ++ +  G  + +TDV W R    +++V++    R   ++  D E NE   EH+ + ++
Sbjct: 407 MQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVFSAWKND-EGNEAEDEHWHELAR 463


>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
           shock protein 83 (HSP83) nearly identical to SP|P27323
           Heat shock protein 81-1 (HSP81-1) (Heat shock protein
           83) {Arabidopsis thaliana}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00183: Hsp90 protein
          Length = 705

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 409 VVAVTRVDLLRSC-QSYNEDGEQNEQFREHFEQFSK 513
           ++ V R +L++ C + +NE  E  E + + +E FSK
Sbjct: 385 ILKVIRKNLVKKCIEMFNEIAENKEDYTKFYEAFSK 420


>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 909

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 446 QDLNRSTLVTATTITDIRIQATSVIPDTVPWPMDRTVA 333
           + +N +TLVTA  I      A   +PDT  W M  T+A
Sbjct: 689 ESVNYATLVTARLIIVASHMAGLGLPDTEAWNMIETIA 726


>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 1187

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 446 QDLNRSTLVTATTITDIRIQATSVIPDTVPWPMDRTVA 333
           + +N +TLVTA  I      A   +PDT  W M  T+A
Sbjct: 689 ESVNYATLVTARLIIVASHMAGLGLPDTEAWNMIETIA 726


>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
           similar to SP|P54278 PMS1 protein homolog 2 (DNA
           mismatch repair protein PMS2) {Homo sapiens}; contains
           Pfam profiles PF02518: ATPase, histidine kinase-, DNA
           gyrase B-, and HSP90-like domain protein, PF01119: DNA
           mismatch repair protein, C-terminal domain
          Length = 923

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -3

Query: 508 KTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQQLRIYVSRLRRLSRIQSPG 353
           + +Q +R     +  P  S+G      L    Q LR    RL RLSR+QS G
Sbjct: 602 RCSQPLRSVATVLDSPAQSTGPKMFSTLEFSFQNLR--TRRLERLSRLQSTG 651


>At3g20940.1 68416.m02647 cytochrome P450 family protein similar to
           Cytochrome P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max]; similar to cytochrome P450 (SP:H71417)
           [Arabidopsis thaliana]
          Length = 523

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 180 ITFDLQNAFVFECFF 136
           ITFD QN+F+F  FF
Sbjct: 5   ITFDFQNSFIFILFF 19


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,416,660
Number of Sequences: 28952
Number of extensions: 144266
Number of successful extensions: 372
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)