Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31982
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical ...    60   9e-10
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    30   1.1  
Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein ( Cae...    28   3.4  
AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin ...    28   3.4  
Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    27   8.0  

>AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical
           protein Y56A3A.4 protein.
          Length = 342

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 33/117 (28%), Positives = 61/117 (52%)
 Frame = +3

Query: 135 QYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVRE 314
           Q    P  S Q+Q   I     Q +P   Q   A V  G        ++ + +L +L+++
Sbjct: 189 QQHQQPPPSQQIQQPPIPQPQQQQAPP-PQMIPAAVPYGS-------IMEKSKLDDLMQQ 240

Query: 315 VDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNM 485
           +  T  L+E V+++L++ ADDF+ + ++ AC + K+R    +E RD++  L+  +NM
Sbjct: 241 ISSTTVLEENVKDVLVEYADDFVSSLIDKACKMIKNREVKKIESRDIEFILKNVYNM 297


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 28/116 (24%), Positives = 41/116 (35%)
 Frame = +3

Query: 162  PQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 341
            P++Q  S +    +    G + +  +VGQ      S  L S     EL  E+D  V+  E
Sbjct: 2133 PRMQEDSPKSQDIRQKVYGIEDRFRRVGQAEGAAISKALSSALTEPELKLELDEVVRWCE 2192

Query: 342  EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGND 509
              E+   Q  +      L               E +D  + LE   NM IP    D
Sbjct: 2193 MAEKEAAQNVNSLDGDGLEKLDGRLAQFTKELQERKDDMVQLEMAKNMIIPSLKGD 2248


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 28/116 (24%), Positives = 41/116 (35%)
 Frame = +3

Query: 162  PQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 341
            P++Q  S +    +    G + +  +VGQ      S  L S     EL  E+D  V+  E
Sbjct: 2133 PRMQEDSPKSQDIRQKVYGIEDRFRRVGQAEGAAISKALSSALTEPELKLELDEVVRWCE 2192

Query: 342  EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGND 509
              E+   Q  +      L               E +D  + LE   NM IP    D
Sbjct: 2193 MAEKEAAQNVNSLDGDGLEKLDGRLAQFTKELQERKDDMVQLEMAKNMIIPSLKGD 2248


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 28/116 (24%), Positives = 41/116 (35%)
 Frame = +3

Query: 162  PQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 341
            P++Q  S +    +    G + +  +VGQ      S  L S     EL  E+D  V+  E
Sbjct: 2133 PRMQEDSPKSQDIRQKVYGIEDRFRRVGQAEGAAISKALSSALTEPELKLELDEVVRWCE 2192

Query: 342  EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGND 509
              E+   Q  +      L               E +D  + LE   NM IP    D
Sbjct: 2193 MAEKEAAQNVNSLDGDGLEKLDGRLAQFTKELQERKDDMVQLEMAKNMIIPSLKGD 2248


>Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical
           protein K08E3.4 protein.
          Length = 643

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 69  SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS 227
           S N     A  P+ G VG     + + P   P L    + GSP +  P+GT S
Sbjct: 366 SVNPAPAPAPTPSAGLVGSRKELFSSKP-SGPVLPKPQVNGSPKKWPPVGTTS 417


>Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical
           protein F52B11.4 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +3

Query: 84  AQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQ-GSPSQHSPMGTQSQVAKVGQGGAG 260
           AQ+ ++P  G  GQ   Q    P  SP       Q G+P Q  P G   Q    G  GA 
Sbjct: 213 AQSESIP--GAPGQAGPQGPPGPAGSPGAPGGPGQPGAPGQKGPSGAPGQPGADGNPGAP 270

Query: 261 DQSSQ 275
            Q  Q
Sbjct: 271 GQPGQ 275


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
           protein ZK593.5 protein.
          Length = 1326

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
 Frame = +3

Query: 132 IQYVNNPMQSPQLQNTSIQGSPSQ-HSPMGTQSQVAKVGQGGAGDQSSQLLSR-PRLQEL 305
           I+   N  +  ++  + I G   Q  + MG ++ V ++      D++  +  R  +L+E 
Sbjct: 484 IRVAENLKRQTEIAESKIAGFQEQIDAAMGAEAMVTQLT-----DKNFNMEERIMQLEET 538

Query: 306 VREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLH 464
           + +++    LDE++ E+  Q   D     +     L  H H  N  +RD Q H
Sbjct: 539 IEDMEEARDLDEQLAEVQKQQVKDL----MKEIEQLKIHIHELNGRIRDEQKH 587


>AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA for dystrobrevin. ).
          Length = 590

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = +3

Query: 249 GGAGDQSSQLLSRPRLQELVREVDPTV--QLDEEVEEMLLQLADDFIDTTLNSACALAKH 422
           GG G +       P     +  V P V  ++ + ++EM LQ  D     T  +AC L   
Sbjct: 6   GGGGPREPSSAPSPDHHRAMHSVPPIVASEMQQLIDEMRLQDFDSIRFATYRAACKLRFI 65

Query: 423 RHAPNVELRDV 455
           +    V L D+
Sbjct: 66  QQKTKVHLVDI 76


>AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin
           homolog protein 1 protein.
          Length = 590

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = +3

Query: 249 GGAGDQSSQLLSRPRLQELVREVDPTV--QLDEEVEEMLLQLADDFIDTTLNSACALAKH 422
           GG G +       P     +  V P V  ++ + ++EM LQ  D     T  +AC L   
Sbjct: 6   GGGGPREPSSAPSPDHHRAMHSVPPIVASEMQQLIDEMRLQDFDSIRFATYRAACKLRFI 65

Query: 423 RHAPNVELRDV 455
           +    V L D+
Sbjct: 66  QQKTKVHLVDI 76


>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 318 DPTVQLDEEVEEMLLQLADDFIDTTLNSACAL 413
           D  V + E +E+  + +A   I TTLNS C++
Sbjct: 452 DDRVAIHEAMEQQTISIAKAGITTTLNSRCSV 483


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 156  QSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQ 266
            Q    Q +  QGS SQ  P+G  S     G GGAG+Q
Sbjct: 1097 QGSMAQGSMGQGSMSQ-GPIGIPSSSGIGGMGGAGNQ 1132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,612,946
Number of Sequences: 27780
Number of extensions: 192411
Number of successful extensions: 757
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)