Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31973
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80032-5|AAB53878.1|  552|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF003137-1|AAB93642.1|  294|Caenorhabditis elegans Hypothetical ...    27   6.0  

>U80032-5|AAB53878.1|  552|Caenorhabditis elegans Hypothetical
           protein C32E12.1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 170 TDK*AKTCSPLKPKKPLGVYVLKHKQKNINK 78
           T+K  KT SP+KPKK    +V   K K   K
Sbjct: 7   TEKKTKTESPVKPKKVASKHVKNKKDKKDKK 37


>AF003137-1|AAB93642.1|  294|Caenorhabditis elegans Hypothetical
           protein C27A12.4 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 179 LPAVXXXXXXXXXXSLNVIMVLLSKTNYTSHRFRQDY 289
           LP +          SLNV ++++SK  Y  HR   +Y
Sbjct: 31  LPPIGRDKSVDRHRSLNVFLMVISKEEYHKHRTSSNY 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,943,021
Number of Sequences: 27780
Number of extensions: 176963
Number of successful extensions: 270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)