Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31972
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0332 + 17653413-17653581,17654045-17654139,17654292-176544...    28   5.1  
02_05_1291 - 35516715-35517251,35517339-35518185,35518480-355190...    27   8.9  

>12_02_0332 +
           17653413-17653581,17654045-17654139,17654292-17654444,
           17655013-17655117,17655197-17655268,17655514-17655626,
           17655727-17655861,17655970-17656038,17656154-17656241,
           17656348-17656419,17656505-17656605,17656724-17656841,
           17656933-17656992,17657593-17657703,17659044-17659154
          Length = 523

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = +3

Query: 99  FPFPGKSHMILGEGYVRLLLEANHDVT----YLTPAPLKIDHPKLRQIDVSSTEKGFDFD 266
           F F      ++ +   +LL +  +DV     YL   P+K+D PKL    +S+  K    D
Sbjct: 131 FNFMTYLFQVMEKSNFKLLSDEEYDVAQSGKYLLNLPIKVDEPKLDSKLLSTYFKEHPHD 190

Query: 267 GLFNF--KKLINKEVDLSDTNHKYIVMQ 344
            L +F  K +I +     D    Y +M+
Sbjct: 191 NLPSFANKYIIFRRGIGIDRTTDYFIME 218


>02_05_1291 -
           35516715-35517251,35517339-35518185,35518480-35519009,
           35519092-35519529
          Length = 783

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 198 LKIDHPKLRQIDVSSTE-KGFDFDGLFNFKKLI 293
           L+++HP+L ++D+SS   +  + + L N K+L+
Sbjct: 56  LQVEHPRLAELDISSAGLELVELNSLPNLKRLV 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,839,304
Number of Sequences: 37544
Number of extensions: 249572
Number of successful extensions: 576
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)