Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31972
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022)            29   2.3  
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   28   4.0  
SB_41955| Best HMM Match : RVT_1 (HMM E-Value=5.3e-15)                 28   4.0  
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 28   5.3  
SB_24825| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-29)                 27   6.9  
SB_39844| Best HMM Match : LicD (HMM E-Value=8.6e-06)                  27   6.9  
SB_41861| Best HMM Match : YbgT_YccB (HMM E-Value=0.86)                27   9.2  

>SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022)
          Length = 395

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = -3

Query: 400 VSKSSFCTLGCINNDSVTYCITIYL*FVSDRSTSLLINFLKLNRPSKSKPFSVEDTSICL 221
           V++ S C L C+ ND+   C ++ L   +D +       L  ++    K   + +TS+  
Sbjct: 30  VARQSACVLACLRNDT---CFSLNLAAKADANRQFWCEILATDKYKNQKLHEMNETSVHF 86

Query: 220 NFG 212
           + G
Sbjct: 87  SIG 89


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 511  WGSSDDDQINGQLKTVENPEYKSLYIHS 428
            W + D D  +G  KT+E  + KS+Y HS
Sbjct: 1576 WDNYDGDNDDGDSKTIEANKDKSVYHHS 1603


>SB_41955| Best HMM Match : RVT_1 (HMM E-Value=5.3e-15)
          Length = 962

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -3

Query: 511 WGSSDDDQINGQLK--TVENPEYKSLYIHSTITASNV*SVS 395
           W S D +  NG+L   ++ENP YK++++      +N+ S S
Sbjct: 27  WRSRDGNASNGRLGVLSIENPGYKAVHVEQPSCLTNLESDS 67


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 348 VTESLLMHPNVQKLLLDTDQTFDAVIVEWMYSDL-YSGFSTVFNC 479
           ++ESLL+  NV   L+ T+ TF+ ++  W   +L Y+   TV  C
Sbjct: 271 LSESLLLAWNVTGCLVFTNSTFNPLVYYWKIRELRYNVNETVSLC 315


>SB_24825| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-29)
          Length = 338

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -3

Query: 331 YL*FVSDRSTSL--LINFLKLNRPSKSKPFSVEDTSICLNFG*SIFSGAGVKYVTS*LAS 158
           +L FVS +  +L  L  + K+ RPS+ +       ++C+  G  IFSG  +       AS
Sbjct: 103 FLAFVSLQIMALTALNRYFKVMRPSQCRKVFTHRKTLCMVLGSCIFSGLALGIALYPQAS 162

Query: 157 KRSLTYPSPKI 125
           +  + +P   I
Sbjct: 163 QSFIFHPGKVI 173


>SB_39844| Best HMM Match : LicD (HMM E-Value=8.6e-06)
          Length = 280

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -1

Query: 399 YPKAVFVRWDALTMTRLHIALRYTCDSYLIDRLLC*STS*S*TGHRNQNPF 247
           Y KA  +R   L +TRL   L   CD + +   L   T      H+  NPF
Sbjct: 67  YVKASHLRVSQLILTRLLRVLALLCDKHGVRYFLFHGTLLGAVRHQGHNPF 117


>SB_41861| Best HMM Match : YbgT_YccB (HMM E-Value=0.86)
          Length = 144

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 448 KSLYIHSTITASNV*SVSKSSFCTLGCINNDSV 350
           K L+IH  +   N    +  S C  GC+ ND++
Sbjct: 24  KFLFIHCRVVVCN--GTNPESRCAKGCVENDAI 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,474,050
Number of Sequences: 59808
Number of extensions: 318631
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)