Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31972
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20710.1 68416.m02621 F-box protein-related contains weak hit...    29   2.5  
At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containi...    27   5.7  
At3g57300.1 68416.m06378 transcriptional activator, putative sim...    27   5.7  
At3g32330.1 68416.m04125 DNA repair protein-related weak similar...    27   7.5  
At4g34180.1 68417.m04850 cyclase family protein contains Pfam pr...    27   9.9  

>At3g20710.1 68416.m02621 F-box protein-related contains weak hit to
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           contains weak hit to Pfam PF00646: F-box domain
          Length = 362

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 385 NCFWIQIKRLMP*LLSGCIATCILGFQLSSTVH 483
           N +W Q KR+MP    GC     LG+  SS  H
Sbjct: 125 NPYWGQTKRIMPRPPFGCFDRYALGYDKSSGSH 157


>At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1038

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -2

Query: 494 RPNKWTVEDS*----KPRIQVAIHPLNNHGIKRLICIQKQFL 381
           RP+ W++ D      KPR +   HPL++   +R+I  + Q+L
Sbjct: 40  RPDPWSLSDGNPEKPKPRYERPKHPLSDDDARRIIKKKAQYL 81


>At3g57300.1 68416.m06378 transcriptional activator, putative similar
            to transcriptional activator SRCAP [Homo sapiens]
            GI:5106572; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1507

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
 Frame = +3

Query: 81   YKLLAVFPFP-GKSHMILGEG---YVRLLLEANHDVTYLTPAPLKIDHPKLRQIDVSSTE 248
            Y L ++FP   G   ++ G G   + RL+  +  +V YL  A   +    L    +   E
Sbjct: 969  YILKSIFPSDSGVDQVVSGSGAFGFSRLMDLSPSEVGYL--ALCSVAERLL--FSILRWE 1024

Query: 249  KGFDFDGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLM----HPNVQKLLLDTDQT-- 410
            + F  D L N   + +K+ DLSD N + +  + VT  LLM      N QK  L T  T  
Sbjct: 1025 RQF-LDELVN-SLMESKDGDLSDNNIERVKTKAVTRMLLMPSKVETNFQKRRLSTGPTRP 1082

Query: 411  -FDAVIV 428
             F+A+++
Sbjct: 1083 SFEALVI 1089


>At3g32330.1 68416.m04125 DNA repair protein-related weak similarity
           to SP|P41410 DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}
          Length = 327

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 276 NFKKLINKEVDLSDTNHKYIVMQYVTESLL 365
           NF+KL+N E D   TN K  +   + E+LL
Sbjct: 196 NFRKLLNVEADGPSTNLKMPLFDKLEEALL 225


>At4g34180.1 68417.m04850 cyclase family protein contains Pfam
           profile: PF04199 putative cyclase
          Length = 255

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 246 EKGFDFDGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLMHPNVQKLLLDTDQTFDAVI 425
           + GFD D L    +++N    L D      +   V ESL +   V+++L  T  T   ++
Sbjct: 104 DAGFDTDSLD--LQVLNGPALLVDVPRDKNITAEVMESLHIQRGVRRVLFRTSNTDKRLM 161

Query: 426 VEWMYSDLYSGFST 467
            +  +   ++GF T
Sbjct: 162 FKKEFDSSFAGFMT 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,710,981
Number of Sequences: 28952
Number of extensions: 214860
Number of successful extensions: 551
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)