BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV31971 (496 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 155 3e-39 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 70 2e-13 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 70 2e-13 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 69 4e-13 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 55 7e-09 SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 42 5e-05 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 40 2e-04 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 40 3e-04 SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.002 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.89 SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 2.7 SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 4.7 SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 6.3 SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 6.3 SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 8.3 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 155 bits (377), Expect = 3e-39 Identities = 70/78 (89%), Positives = 76/78 (97%) Frame = -3 Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315 VMSGGT MYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWI Sbjct: 298 VMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWI 357 Query: 314 SKEEYDESGPGIVHRKCF 261 SK+EYDESGPGIV+RKCF Sbjct: 358 SKQEYDESGPGIVYRKCF 375 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 70.1 bits (164), Expect = 2e-13 Identities = 32/78 (41%), Positives = 53/78 (67%) Frame = -3 Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315 V+SGG+ + G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I Sbjct: 303 VLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLI 362 Query: 314 SKEEYDESGPGIVHRKCF 261 + EEY ++ ++ R+ F Sbjct: 363 TSEEY-KNDQNVIFRRRF 379 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 69.7 bits (163), Expect = 2e-13 Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 6/83 (7%) Frame = -3 Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQ 324 ++ GGT + G + R+Q E+ L P + ++KI A ER Y+ W+GGSIL+SL TF Q Sbjct: 351 IVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQ 409 Query: 323 MWISKEEYDESGP---GIVHRKC 264 +WIS++EY+E G ++ ++C Sbjct: 410 LWISRQEYEEHGSDRLALIEKRC 432 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 68.9 bits (161), Expect = 4e-13 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Frame = -3 Query: 494 VMSGGTXMYPGIADRMQKEIXALAP-STIKIKIIAPPER-KYSVWIGGSILASLSTFQQM 321 V++GGT + PG+++R+Q E+ LA S I + +VW GGSILASL FQ + Sbjct: 348 VVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHL 407 Query: 320 WISKEEYDESG 288 W+SK+EYDE G Sbjct: 408 WVSKQEYDEVG 418 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 54.8 bits (126), Expect = 7e-09 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 12/81 (14%) Frame = -3 Query: 494 VMSGGTXMYPGIADRMQKEIXAL--------APSTI---KIKIIAPPERKYSVWIGGSIL 348 V+SGG+ MY G+ R++KEI L P+ + K+KI P R+++V+IGG++L Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357 Query: 347 AS-LSTFQQMWISKEEYDESG 288 A ++ MW+SK E++E G Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378 >SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 41.9 bits (94), Expect = 5e-05 Identities = 23/76 (30%), Positives = 37/76 (48%) Frame = -3 Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315 V GG +PG R+ E+ +LAP+ ++K+ P + W S + L + I Sbjct: 324 VTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKI 382 Query: 314 SKEEYDESGPGIVHRK 267 ++ EY E G I+ RK Sbjct: 383 TRSEYSEHGANIMTRK 398 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 39.9 bits (89), Expect = 2e-04 Identities = 18/70 (25%), Positives = 34/70 (48%) Frame = -3 Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315 +++GG PG+ R+++E+ ++ P I + W G S + F+ + Sbjct: 639 LITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKV 698 Query: 314 SKEEYDESGP 285 ++EEY E GP Sbjct: 699 TREEYLEKGP 708 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 39.5 bits (88), Expect = 3e-04 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 14/89 (15%) Frame = -3 Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIK--------------IKIIAPPERKYSVWIGG 357 V+SGG+ ++ +R+Q+++ + I + +I+ ++ +VW GG Sbjct: 331 VLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGG 390 Query: 356 SILASLSTFQQMWISKEEYDESGPGIVHR 270 S+LA F +K +Y+E G I R Sbjct: 391 SLLAQTPEFGSYCHTKADYEEYGASIARR 419 >SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 36.7 bits (81), Expect = 0.002 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Frame = -3 Query: 485 GGTXMYPGIADRMQKEIXALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 315 GG +PG A +++ I + + I +I PP + ++ W G I + ++WI Sbjct: 537 GGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWI 596 Query: 314 SKEEYDESGPGIVHRK 267 ++ G ++ K Sbjct: 597 KNSDWKMLGSRVLQYK 612 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 27.9 bits (59), Expect = 0.89 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%) Frame = -3 Query: 368 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 267 ++GGSI+A S + + +++ EEY + GP +H K Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522 >SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 617 Score = 26.2 bits (55), Expect = 2.7 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -3 Query: 443 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLST 333 KEI + A S I + + P E+ W ILA L+T Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248 >SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 157 Score = 25.4 bits (53), Expect = 4.7 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +1 Query: 205 ELGRAQHHTAPGSRGRAA*KHLRWT 279 E+ R++ H+ PGS+G A +L WT Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67 >SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces pombe|chr 3|||Manual Length = 879 Score = 25.0 bits (52), Expect = 6.3 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 417 DHQDQDHRSPREEVLRMDRWIHPG 346 D D+ R+ E VLRM R++ PG Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522 >SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual Length = 981 Score = 25.0 bits (52), Expect = 6.3 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Frame = -1 Query: 214 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 47 VR +A S +L P N SN TP+ + I K N+ S + L D C R Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632 >SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 689 Score = 24.6 bits (51), Expect = 8.3 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 376 YFLSGGAMILILMVEGARAXISFCILSAIPGY 471 Y +SGGA + +A +S CI +PGY Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,673,708 Number of Sequences: 5004 Number of extensions: 29041 Number of successful extensions: 68 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 63 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 194131776 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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