Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31971
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   155   3e-39
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    70   2e-13
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    70   2e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    69   4e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    55   7e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    42   5e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    40   2e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    40   3e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    37   0.002
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   0.89 
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   2.7  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    25   4.7  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   6.3  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   6.3  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   8.3  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  155 bits (377), Expect = 3e-39
 Identities = 70/78 (89%), Positives = 76/78 (97%)
 Frame = -3

Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
           VMSGGT MYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 298 VMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWI 357

Query: 314 SKEEYDESGPGIVHRKCF 261
           SK+EYDESGPGIV+RKCF
Sbjct: 358 SKQEYDESGPGIVYRKCF 375


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 32/78 (41%), Positives = 53/78 (67%)
 Frame = -3

Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
           V+SGG+ +  G  +R   E+ A++    ++KI A PER ++ W+GGSILASLSTF+++ I
Sbjct: 303 VLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLI 362

Query: 314 SKEEYDESGPGIVHRKCF 261
           + EEY ++   ++ R+ F
Sbjct: 363 TSEEY-KNDQNVIFRRRF 379


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 6/83 (7%)
 Frame = -3

Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQ 324
           ++ GGT +  G + R+Q E+  L P + ++KI A     ER Y+ W+GGSIL+SL TF Q
Sbjct: 351 IVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQ 409

Query: 323 MWISKEEYDESGP---GIVHRKC 264
           +WIS++EY+E G     ++ ++C
Sbjct: 410 LWISRQEYEEHGSDRLALIEKRC 432


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 68.9 bits (161), Expect = 4e-13
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
 Frame = -3

Query: 494 VMSGGTXMYPGIADRMQKEIXALAP-STIKIKIIAPPER-KYSVWIGGSILASLSTFQQM 321
           V++GGT + PG+++R+Q E+  LA  S I +           +VW GGSILASL  FQ +
Sbjct: 348 VVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHL 407

Query: 320 WISKEEYDESG 288
           W+SK+EYDE G
Sbjct: 408 WVSKQEYDEVG 418


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 54.8 bits (126), Expect = 7e-09
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 12/81 (14%)
 Frame = -3

Query: 494 VMSGGTXMYPGIADRMQKEIXAL--------APSTI---KIKIIAPPERKYSVWIGGSIL 348
           V+SGG+ MY G+  R++KEI  L         P+ +   K+KI   P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357

Query: 347 AS-LSTFQQMWISKEEYDESG 288
           A  ++    MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 41.9 bits (94), Expect = 5e-05
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = -3

Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
           V  GG   +PG   R+  E+ +LAP+  ++K+  P +     W   S +  L  +    I
Sbjct: 324 VTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKI 382

Query: 314 SKEEYDESGPGIVHRK 267
           ++ EY E G  I+ RK
Sbjct: 383 TRSEYSEHGANIMTRK 398


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = -3

Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
           +++GG    PG+  R+++E+ ++ P    I +          W G S  +    F+   +
Sbjct: 639 LITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKV 698

Query: 314 SKEEYDESGP 285
           ++EEY E GP
Sbjct: 699 TREEYLEKGP 708


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
 Frame = -3

Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIK--------------IKIIAPPERKYSVWIGG 357
           V+SGG+ ++    +R+Q+++  +    I               + +I+   ++ +VW GG
Sbjct: 331 VLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGG 390

Query: 356 SILASLSTFQQMWISKEEYDESGPGIVHR 270
           S+LA    F     +K +Y+E G  I  R
Sbjct: 391 SLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 485 GGTXMYPGIADRMQKEIXALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 315
           GG   +PG A  +++ I +   +   I +I PP   + ++  W G  I   +    ++WI
Sbjct: 537 GGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWI 596

Query: 314 SKEEYDESGPGIVHRK 267
              ++   G  ++  K
Sbjct: 597 KNSDWKMLGSRVLQYK 612


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -3

Query: 368 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 267
           ++GGSI+A  S  + +   +++ EEY + GP  +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 443 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLST 333
           KEI + A S I +  + P E+    W    ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 205 ELGRAQHHTAPGSRGRAA*KHLRWT 279
           E+ R++ H+ PGS+G A   +L WT
Sbjct: 46  EISRSETHSIPGSKGEA---NLIWT 67


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 417 DHQDQDHRSPREEVLRMDRWIHPG 346
           D  D+  R+  E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 214 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 47
           VR  +A  S  +L  P   N  SN TP+ +   I K   N+ S  + L   D C   R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 376 YFLSGGAMILILMVEGARAXISFCILSAIPGY 471
           Y +SGGA +        +A +S CI   +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,708
Number of Sequences: 5004
Number of extensions: 29041
Number of successful extensions: 68
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)